View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13942_low_16 (Length: 255)
Name: NF13942_low_16
Description: NF13942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13942_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 33063225 - 33062993
Alignment:
| Q |
1 |
gttagcgtattcagagattcattattcccaaatattactacaactatggatttcaaccttcacattgctcagaaaatcaaagttcaaatagtgtataaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33063225 |
gttagcgtattcagagattcattattcccaaatattactacaactatggatttcaaccttcacattgctcagaaaatcaaagttcaaatagtgtataaag |
33063126 |
T |
|
| Q |
101 |
gagataaacaaaatctgttagtgtttgtcaaggatgttgttgacaactacaagttcccatcattagtgtttaatcattctgttgatttaggagcttatat |
200 |
Q |
| |
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||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
33063125 |
gagatgaacaaaatctgttagtgtttgtcaaggat---gttgacaactacaagttcccatcattagtgcttaatcattctgttgatttaggagcttatat |
33063029 |
T |
|
| Q |
201 |
gctggaccatggtggcccaatgtttattgggatttc |
236 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||| |
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| T |
33063028 |
gctggaccatggtggcccaatgtttattggaatttc |
33062993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 33064320 - 33064088
Alignment:
| Q |
1 |
gttagcgtattcagagattcattattcccaaatattactacaactatggatttcaaccttcacattgctcagaaaatcaaagttcaaatagtgtataaag |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33064320 |
gttagcgtattcagagattcattattcccaaatattactacaactatggatttcaaccttcacattgctcagaaaatcaaagttcaaatagtgtataaag |
33064221 |
T |
|
| Q |
101 |
gagataaacaaaatctgttagtgtttgtcaaggatgttgttgacaactacaagttcccatcattagtgtttaatcattctgttgatttaggagcttatat |
200 |
Q |
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||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
33064220 |
gagatgaacaaaatctgttagtgtttgtcaaggat---gttgacaactacaagttcccatcattagtgcttaatcattctgttgatttaggagcttatat |
33064124 |
T |
|
| Q |
201 |
gctggaccatggtggcccaatgtttattgggatttc |
236 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||| |
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| T |
33064123 |
gctggaccatggtggcccaatgtttattggaatttc |
33064088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 33065406 - 33065174
Alignment:
| Q |
1 |
gttagcgtattcagagattcattattcccaaatattactacaactatggatttcaaccttcacattgctcagaaaatcaaagttcaaatagtgtataaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33065406 |
gttagcgtattcagagattcattattcccaaatattactacaactatggatttcaaccttcacattgctcagaaaatcaaagttcaaatagtgtataaag |
33065307 |
T |
|
| Q |
101 |
gagataaacaaaatctgttagtgtttgtcaaggatgttgttgacaactacaagttcccatcattagtgtttaatcattctgttgatttaggagcttatat |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
33065306 |
gagatgaacaaaatctgttagtgtttgtcaaggat---gttgacaactacaagttcccatcattagtgcttaatcattctgttgatttaggagcttatat |
33065210 |
T |
|
| Q |
201 |
gctggaccatggtggcccaatgtttattgggatttc |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |
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| T |
33065209 |
gctggaccatggtggcccaatgtttattggaatttc |
33065174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 33066480 - 33066248
Alignment:
| Q |
1 |
gttagcgtattcagagattcattattcccaaatattactacaactatggatttcaaccttcacattgctcagaaaatcaaagttcaaatagtgtataaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33066480 |
gttagcgtattcagagattcattattcccaaatattactacaactatggatttcaaccttcacattgctcagaaaatcaaagttcaaatagtgtataaag |
33066381 |
T |
|
| Q |
101 |
gagataaacaaaatctgttagtgtttgtcaaggatgttgttgacaactacaagttcccatcattagtgtttaatcattctgttgatttaggagcttatat |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
33066380 |
gagatgaacaaaatctgttagtgtttgtcaaggat---gttgacaactacaagttcccatcattagtgcttaatcattctgttgatttaggagcttatat |
33066284 |
T |
|
| Q |
201 |
gctggaccatggtggcccaatgtttattgggatttc |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |
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| T |
33066283 |
gctggaccatggtggcccaatgtttattggaatttc |
33066248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 33068618 - 33068386
Alignment:
| Q |
1 |
gttagcgtattcagagattcattattcccaaatattactacaactatggatttcaaccttcacattgctcagaaaatcaaagttcaaatagtgtataaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33068618 |
gttagcgtattcagagattcattattcccaaatattactacaactatggatttcaaccttcacattgctcagaaaatcaaagttcaaatagtgtataaag |
33068519 |
T |
|
| Q |
101 |
gagataaacaaaatctgttagtgtttgtcaaggatgttgttgacaactacaagttcccatcattagtgtttaatcattctgttgatttaggagcttatat |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
33068518 |
gagatgaacaaaatctgttagtgtttgtcaaggat---gttgacaactacaagttcccatcattagtgcttaatcattctgttgatttaggagcttatat |
33068422 |
T |
|
| Q |
201 |
gctggaccatggtggcccaatgtttattgggatttc |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |
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| T |
33068421 |
gctggaccatggtggcccaatgtttattggaatttc |
33068386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 33067566 - 33067334
Alignment:
| Q |
1 |
gttagcgtattcagagattcattattcccaaatattactacaactatggatttcaaccttcacattgctcagaaaatcaaagttcaaatagtgtataaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33067566 |
gttagcgtattcagagattcattattcccaaatattactacaactatggatttcaaccttcacattgctcagaaaatcaaagttcaaatagtgtataaag |
33067467 |
T |
|
| Q |
101 |
gagataaacaaaatctgttagtgtttgtcaaggatgttgttgacaactacaagttcccatcattagtgtttaatcattctgttgatttaggagcttatat |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
33067466 |
gagatgaacaaaatctgttagtgtttgtcaaggat---gttgacaactacaagtttccatcattagtgcttaatcattctgttgatttaggagcttatat |
33067370 |
T |
|
| Q |
201 |
gctggaccatggtggcccaatgtttattgggatttc |
236 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||| |
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|
| T |
33067369 |
gctgaaccatggtggcccaatgtttattggaatttc |
33067334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 33069704 - 33069472
Alignment:
| Q |
1 |
gttagcgtattcagagattcattattcccaaatattactacaactatggatttcaaccttcacattgctcagaaaatcaaagttcaaatagtgtataaag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
33069704 |
gttagcgtattcagagattcattattcccaaatattactacaactatggatttcaaccttcacattgctaagaaaatcaaagttcaaatagtgtataaag |
33069605 |
T |
|
| Q |
101 |
gagataaacaaaatctgttagtgtttgtcaaggatgttgttgacaactacaagttcccatcattagtgtttaatcattctgttgatttaggagcttatat |
200 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
33069604 |
gagatgaacaaaatctgttagtgtttatcaaggat---gttgacaactacaagttcccatcattagtgcttaatcattctgttgatttaggagcttatat |
33069508 |
T |
|
| Q |
201 |
gctggaccatggtggcccaatgtttattgggatttc |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |
|
|
| T |
33069507 |
gctggaccatggtggcccaatgtttattggaatttc |
33069472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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