View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13942_low_19 (Length: 233)
Name: NF13942_low_19
Description: NF13942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13942_low_19 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 2009149 - 2008924
Alignment:
| Q |
1 |
tgggataaattgttactatgttgatcctaaatcttcaacatcaagatataatacaatcatggcccagttttaaaatgttactccatacttatggtcctta |
100 |
Q |
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| T |
2009149 |
tgggataaattgttactatgttgatcctaaatcttcaacatcaagatataatacaatcatggcccagttttcaaatgttactccatacttatggtcctta |
2009050 |
T |
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| Q |
101 |
aagagtgctccggtggtactagttaacatttcccataattttaataatgaaatagaaagatgcataaaataaatcaacaggatacattgtgaacttgact |
200 |
Q |
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| T |
2009049 |
aagagtgctccggtggcactagttaacatttcccataattttaataatgaaatagaaagatgcataaaata-------aggatacattgtgaacttgact |
2008957 |
T |
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| Q |
201 |
tcaaatttccatggagaaaacagttcatattgc |
233 |
Q |
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| T |
2008956 |
tcaaatttccatggagaaaacagttcatattgc |
2008924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 1967815 - 1967893
Alignment:
| Q |
1 |
tgggataaattgttactatgttgatcctaaatcttcaacatcaagatataatacaatcatggcccagttttaaaatgtt |
79 |
Q |
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| T |
1967815 |
tgggataaattgttactatgttgatcctaaatcttcaacatcaagatataatacaatcatggcccagttttcaaatgtt |
1967893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 1968039 - 1968091
Alignment:
| Q |
181 |
gatacattgtgaacttgacttcaaatttccatggagaaaacagttcatattgc |
233 |
Q |
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| T |
1968039 |
gatacattgtgaacttgacctcaaatttccatggagaaaacagttcatattgc |
1968091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 135 - 178
Target Start/End: Original strand, 1967919 - 1967962
Alignment:
| Q |
135 |
ataattttaataatgaaatagaaagatgcataaaataaatcaac |
178 |
Q |
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| T |
1967919 |
ataattttaataatgaaatagaaagatgcataaaataaatcaac |
1967962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 2005596 - 2005544
Alignment:
| Q |
181 |
gatacattgtgaacttgacttcaaatttccatggagaaaacagttcatattgc |
233 |
Q |
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| T |
2005596 |
gatacactgtgaacttgaccacaagtttccatggagaaaacaattcatattgc |
2005544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 135
Target Start/End: Original strand, 30104910 - 30104947
Alignment:
| Q |
98 |
ttaaagagtgctccggtggtactagttaacatttccca |
135 |
Q |
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| T |
30104910 |
ttaaagagtgctccgggggcactagttaacatttccca |
30104947 |
T |
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