View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13942_low_2 (Length: 656)

Name: NF13942_low_2
Description: NF13942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13942_low_2
NF13942_low_2
[»] chr7 (4 HSPs)
chr7 (144-639)||(353996-354491)
chr7 (451-633)||(10580686-10580867)
chr7 (464-628)||(10575299-10575462)
chr7 (338-388)||(10580612-10580662)
[»] chr3 (7 HSPs)
chr3 (464-639)||(21584693-21584867)
chr3 (465-628)||(25084951-25085113)
chr3 (465-628)||(24923567-24923729)
chr3 (525-628)||(31825664-31825766)
chr3 (464-628)||(24981958-24982121)
chr3 (465-620)||(24920001-24920155)
chr3 (465-621)||(24497373-24497528)
[»] chr8 (1 HSPs)
chr8 (464-628)||(14261139-14261302)
[»] chr4 (2 HSPs)
chr4 (465-539)||(22898466-22898540)
chr4 (465-539)||(22950134-22950208)


Alignment Details
Target: chr7 (Bit Score: 480; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 144 - 639
Target Start/End: Original strand, 353996 - 354491
Alignment:
Q  144 tgtgatgtttgtttttgaaggttaagtttgccactataacaaagaagcttgatcaaaagactcagaaactcggacccgcagttggttatgtctgatctgt 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |    
T  353996 tgtgatgtttgtttttgaaggttaagtttgccactataacaaagaagcttgatcagaagactcagaaactcggacccgcagttggttatgtctgatctat 354095  T
Q  244 tgaaggttgaagggaaggagacaagtgaaattcatacattatgtaactgtaaagtagagaattagctttattctttccctctattactccataattgtga 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  354096 tgaaggttgaagggaaggagacaagtgaaattcatacattatgtaactgtaaagtagagaattagctttattctttccctctattactccataattgtga 354195  T
Q  344 tcattgctggagcagtgttatggattcttcaacgcataacaaatgatgagtttcagttgtctccatagaaacatgtccaaatagtgttgagtcattgtgt 443  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  354196 tcattgctggagcagtgttatggattcttcaatgcataacaaatgatgagtttcagttgtctccatagaaacatgtccaaatagtgttgagtcattgtgt 354295  T
Q  444 gtgtttgtaatgtctggtcaaggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagat 543  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  354296 gtgtttgtaatgtctggtcaaggaaagggaggtgcaaagtgacatagcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagat 354395  T
Q  544 tggcgagaagaggtggtgtgaagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgat 639  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  354396 tggcgagaagaggtggtgtgaagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgat 354491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 451 - 633
Target Start/End: Original strand, 10580686 - 10580867
Alignment:
Q  451 taatgtctggtcaaggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgag 550  Q
    |||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10580686 taatgtctggtcaatgaaagggaggtgcaaagtgatattgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgag 10580785  T
Q  551 aagaggtggtgtgaagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatt 633  Q
    ||||| ||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  10580786 aagagttggtgtgaagaggatcagtgg-tttgatctatgaggaaataagaggactgttgaagattttcttgcagaataagatt 10580867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 464 - 628
Target Start/End: Original strand, 10575299 - 10575462
Alignment:
Q  464 aggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtg 563  Q
    ||||||||| ||||||||| ||||||||||||||||  | |  ||||| |||||||| |||||||||||||||||| |||||||||||||||| ||||||    
T  10575299 aggaaaggggggtgcaaagagacatcgcaaggttctccgtgacaacatccaaggaatcacaaagccagcgattcgtcgattggcgagaagaggaggtgtg 10575398  T
Q  564 aagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatg 628  Q
    || || ||||||||  || ||||||||||||| |||||| ||||||||||| |||||| ||||||    
T  10575399 aaaagaatcagtgg-attgatctatgaggaaacaagaggtgtgttgaagatcttcttggagaatg 10575462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 338 - 388
Target Start/End: Original strand, 10580612 - 10580662
Alignment:
Q  338 ttgtgatcattgctggagcagtgttatggattcttcaacgcataacaaatg 388  Q
    |||| ||||||| ||||||||||| ||||||||||||||||||||||||||    
T  10580612 ttgttatcattgttggagcagtgtcatggattcttcaacgcataacaaatg 10580662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 8e-35; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 464 - 639
Target Start/End: Complemental strand, 21584867 - 21584693
Alignment:
Q  464 aggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtg 563  Q
    ||||||||||||||||||| ||||  | || |||||| | | ||||||||| ||||| || ||||||||||||||| ||||||||||||||||||||||     
T  21584867 aggaaagggaggtgcaaagagacacaggaaagttcttcgtgataacattcagggaatcaccaagccagcgattcgtcgattggcgagaagaggtggtgtt 21584768  T
Q  564 aagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgat 639  Q
    ||||| |||||||| ||| || |||||||||| |||||||||  | |||||||||||| |||||| |||| |||||    
T  21584767 aagagaatcagtgg-tttgatttatgaggaaacaagaggagttcttaagattttcttggagaatgtgattcgtgat 21584693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 465 - 628
Target Start/End: Original strand, 25084951 - 25085113
Alignment:
Q  465 ggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtga 564  Q
    |||||||||||||||||| | ||| | ||||||||| | | |||||| || || || || ||||| || |||||||||||||||||||||||||||||||    
T  25084951 ggaaagggaggtgcaaagaggcatagaaaggttcttcgtgataacatccagggtatcaccaagcctgccattcgtagattggcgagaagaggtggtgtga 25085050  T
Q  565 agaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatg 628  Q
    |||| |||||||| ||| || ||||| ||||  ||||| || |||||||| |||||| ||||||    
T  25085051 agagaatcagtgg-tttgatatatgaagaaaccagaggtgtcttgaagatcttcttggagaatg 25085113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 465 - 628
Target Start/End: Complemental strand, 24923729 - 24923567
Alignment:
Q  465 ggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtga 564  Q
    |||||||||||||||||| | ||| | ||||||||| | | |||||| || || || || ||||| || |||||| ||||||| |||||||||||||| |    
T  24923729 ggaaagggaggtgcaaagaggcatagaaaggttcttcgtgataacatccagggtatcaccaagcctgctattcgtcgattggcaagaagaggtggtgtta 24923630  T
Q  565 agaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatg 628  Q
    |||| |||||||| ||| |||||||| ||||  ||||| || |||||||| |||||| ||||||    
T  24923629 agagaatcagtgg-tttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatg 24923567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 525 - 628
Target Start/End: Complemental strand, 31825766 - 31825664
Alignment:
Q  525 aagccagcgattcgtagattggcgagaagaggtggtgtgaagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcag 624  Q
    ||||| || |||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||  ||||| || |||||||| |||||| ||    
T  31825766 aagcctgccattcgtcgattggcgagaagaggtggtgtgaagaggatcagtgg-tttgatctatgaagaaactagaggtgtcttgaagatcttcttggag 31825668  T
Q  625 aatg 628  Q
    ||||    
T  31825667 aatg 31825664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 464 - 628
Target Start/End: Original strand, 24981958 - 24982121
Alignment:
Q  464 aggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtg 563  Q
    ||||||||||||||||||| | ||| | || |||||| | | |||||| || || || || ||||| || |||||| ||||||| ||||||||||||||     
T  24981958 aggaaagggaggtgcaaagaggcataggaaagttcttcgtgataacatccagggtatcaccaagcctgctattcgtcgattggcaagaagaggtggtgtt 24982057  T
Q  564 aagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatg 628  Q
    ||||| |||||||| ||| || ||||| ||||  ||||| || |||||||| |||||| ||||||    
T  24982058 aagagaatcagtgg-tttgatatatgaagaaaccagaggtgtcttgaagatcttcttggagaatg 24982121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 465 - 620
Target Start/End: Complemental strand, 24920155 - 24920001
Alignment:
Q  465 ggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtga 564  Q
    |||||||||||||||||| | ||| | || |||||| | | |||||| || || || || ||||| || |||||| ||||||| ||||||||||||||||    
T  24920155 ggaaagggaggtgcaaagaggcataggaaagttcttcgtgataacatccagggtatcaccaagcctgcaattcgtcgattggcaagaagaggtggtgtga 24920056  T
Q  565 agaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttctt 620  Q
    |||| ||||| || ||| |||||||| ||||  ||||| || |||||||| |||||    
T  24920055 agagaatcagcgg-tttgatctatgaagaaaccagaggtgtcttgaagatcttctt 24920001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 465 - 621
Target Start/End: Complemental strand, 24497528 - 24497373
Alignment:
Q  465 ggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtga 564  Q
    |||||||||||||||||| | ||| | ||||||||| | |  ||||| || || || || ||||| || |||||| ||||||| |||||||||||||| |    
T  24497528 ggaaagggaggtgcaaagaggcataggaaggttcttcgtgacaacatccagggtatcaccaagcctgctattcgtcgattggcaagaagaggtggtgtta 24497429  T
Q  565 agaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttg 621  Q
    |||| ||||||||  || |||||||| ||||  ||||| || |||||||| ||||||    
T  24497428 agagaatcagtgg-attgatctatgaagaaaccagaggtgtcttgaagatcttcttg 24497373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 464 - 628
Target Start/End: Complemental strand, 14261302 - 14261139
Alignment:
Q  464 aggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgtagattggcgagaagaggtggtgtg 563  Q
    ||||||||||||||||||| |||||||||| || ||| | |  ||||| |||||||| |||||||||||||||||  |||| ||||||||||| ||||||    
T  14261302 aggaaagggaggtgcaaagagacatcgcaaagtgcttcgtgacaacatccaaggaatcacaaagccagcgattcggcgattagcgagaagaggaggtgtg 14261203  T
Q  564 aagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatg 628  Q
    ||||| ||||| ||  || || ||||| ||||   | || |||||||||||||||||| ||||||    
T  14261202 aagagaatcagcgg-gttgatttatgaagaaactcgcggtgtgttgaagattttcttggagaatg 14261139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 465 - 539
Target Start/End: Original strand, 22898466 - 22898540
Alignment:
Q  465 ggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgt 539  Q
    |||||||| || |||||| ||||||| ||||| ||| | |  ||||| || ||||||||||||||||||||||||    
T  22898466 ggaaagggtggagcaaagcgacatcgtaaggtgcttcgtgacaacatccagggaataacaaagccagcgattcgt 22898540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 465 - 539
Target Start/End: Original strand, 22950134 - 22950208
Alignment:
Q  465 ggaaagggaggtgcaaagtgacatcgcaaggttctttgcggtaacattcaaggaataacaaagccagcgattcgt 539  Q
    |||||||| || |||||| ||||||| ||||| ||| | |  ||||| || ||||||||||||||||||||||||    
T  22950134 ggaaagggtggagcaaagcgacatcgtaaggtgcttcgtgacaacatccagggaataacaaagccagcgattcgt 22950208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University