View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13942_low_3 (Length: 637)

Name: NF13942_low_3
Description: NF13942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13942_low_3
NF13942_low_3
[»] chr1 (1 HSPs)
chr1 (19-631)||(41988278-41988904)


Alignment Details
Target: chr1 (Bit Score: 528; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 19 - 631
Target Start/End: Complemental strand, 41988904 - 41988278
Alignment:
Q  19 gaaaaattagtattatcaaaactttctatatggtactaaaacagataagatcataagaatcgaagtgaccattgacaacaatttttatgttggtcgttta 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  41988904 gaaaaattagtattatcaaaactttctatatggtactaaaacagataagatcataagaatcgaagtgaccattgacaacaatttt-atgttggtcattta 41988806  T
Q  119 tgaataattattgcctcaaatctagtagttagcaatagcat-gagtaaccttaaccattcagaaaaatataaatttggtaatctaatcaacacttggcca 217  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  41988805 tgaataattattgcctcaaatctagtagttagcaatagcattgagtaaccttaaccattcagaaaaatataaattaggtaatctaatcaatacttggcca 41988706  T
Q  218 caaataatttgtctacattcctcactcatggtcatgaaattactcaaaatttctgaagatccggagtaggatcttatttctcatgtagttacaatgtctt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  41988705 caaataatttgtctacattcctcactcatggtcatgaaattactcaaaacttccgaagatccggagtaggatcttatttctcatgtagttacaatgtctt 41988606  T
Q  318 tcactcaatcaaatgaaatacaaaaatcaaagtaagaagttacaatgtcttttcatgctctatagagatcacagctgtcaaga-aaaacaataaacaaaa 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  41988605 tcactcaatcaaatgaaatacaaaaatcaaagtaagaagttacaatgtcttttcatgctctatagggatcacagctgtcaagaaaaaacaataaacaaaa 41988506  T
Q  417 aagagtgtcatactaagataatgtcatgttattgtcaagatttcgatc-------------tttcataacatatctttcataaaggagatttacacgtgc 503  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||             | |||||||||||||||||||||||||||||||||||||    
T  41988505 aagagtgtcatactaagataatgtcatgttattgtcaagatttcgatcattcaacacaccttctcataacatatctttcataaaggagatttacacgtgc 41988406  T
Q  504 ggtcaaaagattccagttacatctccatcagactcaaggctttttcttatcttttcagcacattaaacagtattctctttattatcaaaattcctacgta 603  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  41988405 ggtcaaaagattccagttacatctccatcagactcaaggctttttcttatcttttcagcacattaaacagtattctctttattatcaaaattcttacgta 41988306  T
Q  604 tatggcagtcatttaacagtattatcta 631  Q
    ||||||||||||||||||||||||||||    
T  41988305 tatggcagtcatttaacagtattatcta 41988278  T

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