View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13942_low_4 (Length: 631)
Name: NF13942_low_4
Description: NF13942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13942_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 602; Significance: 0; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 602; E-Value: 0
Query Start/End: Original strand, 1 - 614
Target Start/End: Complemental strand, 17110062 - 17109449
Alignment:
| Q |
1 |
ttgcatctttctaaaaggaatggacagttccccaaaatctgtaaagttgatatggatctaggtagaccctccttcggtaaacgttttatgttgggacagt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17110062 |
ttgcatctttctaaaaggaatggacagttccccgaaatctgtaaagttgatatggatctaggtagaccctccttcggtaaacgttttatgttgggacagt |
17109963 |
T |
|
| Q |
101 |
ttttaagagttaatgatgaaagagaggggaggtggtcgagacccttgtagtcaagttgtttgagattttgacaaccagtgatatttagagtggtaagaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17109962 |
ttttaagagttaatgatgaaagagaggggaggtggtcgagacccttgtagtcaagttgtttgagattttgacaaccagtgatatttagagtggtaagaga |
17109863 |
T |
|
| Q |
201 |
gagtggaatcaacccttgattgggaaaagactccacatctgtttcttggatatacatgtaacagagagatgtatttgctggaaacgcccatttcagggag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17109862 |
gagtggaatcaacccttgattgggaaaagactccacatctgtttcttggatatacatgtaacagagagatgtatttgctggaaacgcccatttcagggag |
17109763 |
T |
|
| Q |
301 |
ttgatgagaaggttggaacatttaatgagaaggaggctttttatacttgaaggcaaacctctagcggagaaggacaccaattgtggacaatcatttatag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17109762 |
ttgatgagaaggttggaacatttaatgagaaggaggctttttatacttgaaggcaaacctctagcggagaaggacaccaattgtggacaatcatttatag |
17109663 |
T |
|
| Q |
401 |
acagcttatagagagatggaaggaggatatgcatgcattcaggaagtgattttaactcctctaattttgaaagataaaactgctgaagccttggtgcaga |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
17109662 |
acagcttatagagagatggaaggaggatatgcatgcattcaggaagtgattttaactcctctaattttgaaagataaaactgctgaagcctgggtgcaga |
17109563 |
T |
|
| Q |
501 |
caatcctccatttggaaatgatgcaaatttaggacactcttcaattgagagagatgtgagtttaagatgttcattttcctgtgaaatcatttcgaaatta |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17109562 |
caatcctccatttggaaatgatgcaaatttaggacactcttcaattaagagagatgtgagtttaagatgttcattttcctgtgaaatcatttcgaaatta |
17109463 |
T |
|
| Q |
601 |
atacacttataaac |
614 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
17109462 |
atacacttataaac |
17109449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 28 - 613
Target Start/End: Complemental strand, 16978703 - 16978118
Alignment:
| Q |
28 |
ttccccaaaatctgtaaagttgatatggatctaggtagaccctccttcggtaaacgttttatgttgggacagtttttaagagttaatgatgaaagagagg |
127 |
Q |
| |
|
|||||||| || |||| |||||| |||||| |||| ||||||||||| || || | || ||||||||||| || || ||| | |||| | |||||||| |
|
|
| T |
16978703 |
ttccccaatatttgtagagttgaaatggatttaggcagaccctcctttggcaagcattggatgttgggacaattatttagactcaatgttctaagagagg |
16978604 |
T |
|
| Q |
128 |
ggaggtggtcgagacccttgtagtcaagttgtttgagattttgacaaccagtgatatttagagtggtaagagagagtggaatcaacccttgattgggaaa |
227 |
Q |
| |
|
| |||| || |||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||| |||| |||||||||||| ||||| |
|
|
| T |
16978603 |
gaaggttctcaagacccttgtagtcaagttgtttgagatttcgacaaccacaaatatttagataagtaagagagataggaagcaacccttgattaggaaa |
16978504 |
T |
|
| Q |
228 |
agactccacatctgtttcttggatatacatgtaacagagagatgtatttgctggaaacgcccatttcagggagttgatgagaaggttggaacatttaatg |
327 |
Q |
| |
|
| ||||||||||| |||||| |||||||||| | ||||||||||||| | || || ||||||||||| |||||||| ||||| || || ||||| | |
|
|
| T |
16978503 |
aaactccacatctaattcttgaatatacatgttagagagagatgtattggtcggcaaagcccatttcagcgagttgataagaagttttgagcatttcaca |
16978404 |
T |
|
| Q |
328 |
agaaggaggctttttatacttgaaggcaaacctctagcggagaaggacaccaattgtggacaatcatttatagacagcttatagagagatggaaggagga |
427 |
Q |
| |
|
|||| |||| || ||| ||||| |||||||||| | ||||||| ||| |||| ||||||||||||| |||||| |||||||| |||||||||||||||| |
|
|
| T |
16978403 |
agaaagaggtttcttaggcttgatggcaaacctccatcggagaacgactccaactgtggacaatcatctatagatagcttataaagagatggaaggagga |
16978304 |
T |
|
| Q |
428 |
tatgcatgcattcaggaagtgattttaactcctctaattttgaaagataaaactgctgaagccttggtgcagacaatcctccatttggaaatgatgcaaa |
527 |
Q |
| |
|
||||||||||| ||||||||||||||| | ||| ||||| |||| || ||| || || |||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
16978303 |
catgcatgcatttaggaagtgattttaaattctccaatttggaaatatcaaagtgttgcagccttggtgtagacaatcctccttttggaaatgatgcaaa |
16978204 |
T |
|
| Q |
528 |
tttaggacactcttcaattgagagagatgtgagtttaagatgttcattttcctgtgaaatcatttcgaaattaatacacttataaa |
613 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| || |||||||||||| |
|
|
| T |
16978203 |
tttaggacactctccaattgagagagatgtgagtttaagatgctcattttcctgtgaaatcatttcaaaactactacacttataaa |
16978118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 28 - 613
Target Start/End: Complemental strand, 17030575 - 17029990
Alignment:
| Q |
28 |
ttccccaaaatctgtaaagttgatatggatctaggtagaccctccttcggtaaacgttttatgttgggacagtttttaagagttaatgatgaaagagagg |
127 |
Q |
| |
|
|||||||| || |||| |||||| |||||| |||| ||||||||||| || || | || ||||||||||| || || ||| | |||| | |||||||| |
|
|
| T |
17030575 |
ttccccaatatttgtagagttgaaatggatttaggaagaccctcctttggcaagcattggatgttgggacaattatttagactcaatgttctaagagagg |
17030476 |
T |
|
| Q |
128 |
ggaggtggtcgagacccttgtagtcaagttgtttgagattttgacaaccagtgatatttagagtggtaagagagagtggaatcaacccttgattgggaaa |
227 |
Q |
| |
|
| |||| || |||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||| |||| |||||||||||| ||||| |
|
|
| T |
17030475 |
gaaggttctcaagacccttgtagtcaagttgtttgagatttcgacaaccacggatatttagataagtaagagagaggggaagcaacccttgattaggaaa |
17030376 |
T |
|
| Q |
228 |
agactccacatctgtttcttggatatacatgtaacagagagatgtatttgctggaaacgcccatttcagggagttgatgagaaggttggaacatttaatg |
327 |
Q |
| |
|
|||||||||||||| |||||| ||||||||| | |||| |||||||| | || || || ||||||| |||||||| ||||| || || ||||| | |
|
|
| T |
17030375 |
agactccacatctgcttcttgaatatacatggtaaagagcgatgtattggttgacaaagcacatttcaatgagttgataagaagttttgagcatttcaca |
17030276 |
T |
|
| Q |
328 |
agaaggaggctttttatacttgaaggcaaacctctagcggagaaggacaccaattgtggacaatcatttatagacagcttatagagagatggaaggagga |
427 |
Q |
| |
|
|||| |||| || ||| ||||| |||||||||| | ||||||| ||| |||| |||||||||| || |||||| |||||||| |||||||||||||||| |
|
|
| T |
17030275 |
agaaagaggtttcttaggcttgatggcaaacctccatcggagaacgactccaactgtggacaattatctatagatagcttataaagagatggaaggagga |
17030176 |
T |
|
| Q |
428 |
tatgcatgcattcaggaagtgattttaactcctctaattttgaaagataaaactgctgaagccttggtgcagacaatcctccatttggaaatgatgcaaa |
527 |
Q |
| |
|
||||||||||| ||||||||||||||| | ||| ||||| |||| || ||| || || |||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
17030175 |
catgcatgcatttaggaagtgattttaaattctccaatttggaaatatcaaagtgttgcagccttggtgtagacaatcctccttttggaaatgatgcaaa |
17030076 |
T |
|
| Q |
528 |
tttaggacactcttcaattgagagagatgtgagtttaagatgttcattttcctgtgaaatcatttcgaaattaatacacttataaa |
613 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| || |||||||||||| |
|
|
| T |
17030075 |
tttaggacactctccaattgagagagatgtgagtttaagatgctcattttcctgtgaaatcatttcaaaactactacacttataaa |
17029990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 28 - 613
Target Start/End: Complemental strand, 17048913 - 17048328
Alignment:
| Q |
28 |
ttccccaaaatctgtaaagttgatatggatctaggtagaccctccttcggtaaacgttttatgttgggacagtttttaagagttaatgatgaaagagagg |
127 |
Q |
| |
|
|||||||| || |||| |||||| |||||| |||| ||||||||||| || || | || ||||||||||| || || ||| | |||| | |||||||| |
|
|
| T |
17048913 |
ttccccaatatttgtagagttgaaatggatttaggaagaccctcctttggcaagcattggatgttgggacaattatttagactcaatgttctaagagagg |
17048814 |
T |
|
| Q |
128 |
ggaggtggtcgagacccttgtagtcaagttgtttgagattttgacaaccagtgatatttagagtggtaagagagagtggaatcaacccttgattgggaaa |
227 |
Q |
| |
|
| |||| || |||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||| |||| |||||||||||| ||||| |
|
|
| T |
17048813 |
gaaggttctcaagacccttgtagtcaagttgtttgagatttcgacaaccacggatatttagataagtaagagagaggggaagcaacccttgattaggaaa |
17048714 |
T |
|
| Q |
228 |
agactccacatctgtttcttggatatacatgtaacagagagatgtatttgctggaaacgcccatttcagggagttgatgagaaggttggaacatttaatg |
327 |
Q |
| |
|
|||||||||||||| |||||| ||||||||| | |||| |||||||| | || || || ||||||| |||||||| ||||| || || ||||| | |
|
|
| T |
17048713 |
agactccacatctgcttcttgaatatacatggtaaagagcgatgtattggttgacaaagcacatttcaatgagttgataagaagttttgagcatttcaca |
17048614 |
T |
|
| Q |
328 |
agaaggaggctttttatacttgaaggcaaacctctagcggagaaggacaccaattgtggacaatcatttatagacagcttatagagagatggaaggagga |
427 |
Q |
| |
|
|||| |||| || ||| ||||| |||||||||| | ||||||| ||| |||| |||||||||| || |||||| |||||||| |||||||||||||||| |
|
|
| T |
17048613 |
agaaagaggtttcttaggcttgatggcaaacctccatcggagaacgactccaactgtggacaattatctatagatagcttataaagagatggaaggagga |
17048514 |
T |
|
| Q |
428 |
tatgcatgcattcaggaagtgattttaactcctctaattttgaaagataaaactgctgaagccttggtgcagacaatcctccatttggaaatgatgcaaa |
527 |
Q |
| |
|
||||||||||| ||||||||||||||| | ||| ||||| |||| || ||| || || |||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
17048513 |
catgcatgcatttaggaagtgattttaaattctccaatttggaaatatcaaagtgttgcagccttggtgtagacaatcctccttttggaaatgatgcaaa |
17048414 |
T |
|
| Q |
528 |
tttaggacactcttcaattgagagagatgtgagtttaagatgttcattttcctgtgaaatcatttcgaaattaatacacttataaa |
613 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| || |||||||||||| |
|
|
| T |
17048413 |
tttaggacactctccaattgagagagatgtgagtttaagatgctcattttcctgtgaaatcatttcaaaactactacacttataaa |
17048328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 543 - 614
Target Start/End: Complemental strand, 17024395 - 17024324
Alignment:
| Q |
543 |
aattgagagagatgtgagtttaagatgttcattttcctgtgaaatcatttcgaaattaatacacttataaac |
614 |
Q |
| |
|
|||||||||| || | ||| |||||||||||||||||| ||| ||||||| |||||| || |||||||||| |
|
|
| T |
17024395 |
aattgagagatatttaagtataagatgttcattttcctaggaattcatttcaaaattattaaacttataaac |
17024324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 412 - 455
Target Start/End: Complemental strand, 17024531 - 17024488
Alignment:
| Q |
412 |
agagatggaaggaggatatgcatgcattcaggaagtgattttaa |
455 |
Q |
| |
|
|||||||||| || |||||||||||||| ||||||||||||||| |
|
|
| T |
17024531 |
agagatggaaagaagatatgcatgcatttaggaagtgattttaa |
17024488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 543 - 614
Target Start/End: Complemental strand, 17035157 - 17035086
Alignment:
| Q |
543 |
aattgagagagatgtgagtttaagatgttcattttcctgtgaaatcatttcgaaattaatacacttataaac |
614 |
Q |
| |
|
|||||||||| || | ||| |||||||||||||||||| ||| ||||||| |||||| || |||||||||| |
|
|
| T |
17035157 |
aattgagagatatttaagtataagatgttcattttcctaggaattcatttcaaaattattaaacttataaac |
17035086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 412 - 455
Target Start/End: Complemental strand, 17035293 - 17035250
Alignment:
| Q |
412 |
agagatggaaggaggatatgcatgcattcaggaagtgattttaa |
455 |
Q |
| |
|
|||||||||| || |||||||||||||| ||||||||||||||| |
|
|
| T |
17035293 |
agagatggaaagaagatatgcatgcatttaggaagtgattttaa |
17035250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 543 - 614
Target Start/End: Complemental strand, 17089667 - 17089596
Alignment:
| Q |
543 |
aattgagagagatgtgagtttaagatgttcattttcctgtgaaatcatttcgaaattaatacacttataaac |
614 |
Q |
| |
|
|||||||||| || | ||| |||||||||||||||||| ||| ||||||| |||||| || |||||||||| |
|
|
| T |
17089667 |
aattgagagatatttaagtataagatgttcattttcctaggaattcatttcaaaattattaaacttataaac |
17089596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 412 - 455
Target Start/End: Complemental strand, 17089803 - 17089760
Alignment:
| Q |
412 |
agagatggaaggaggatatgcatgcattcaggaagtgattttaa |
455 |
Q |
| |
|
|||||||||| || |||||||||||||| ||||||||||||||| |
|
|
| T |
17089803 |
agagatggaaagaagatatgcatgcatttaggaagtgattttaa |
17089760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 193 - 239
Target Start/End: Complemental strand, 14314008 - 14313962
Alignment:
| Q |
193 |
gtaagagagagtggaatcaacccttgattgggaaaagactccacatc |
239 |
Q |
| |
|
||||||||| |||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
14314008 |
gtaagagagcgtggaagcaacccttgatcgggaaaagactccacatc |
14313962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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