View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13942_low_5 (Length: 558)
Name: NF13942_low_5
Description: NF13942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13942_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 14 - 460
Target Start/End: Original strand, 44032670 - 44033113
Alignment:
| Q |
14 |
gttataagattggatgaacacaactcctcttaccgactagattcgctgtgaagaaagnnnnnnnnncaggcagaggctggcatatattgcttaagtttct |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
44032670 |
gttataagattggatgaacacaactcctcttaccgactagattcgctgtgaagaaagaaaaaaaaacaggcagaggctggcatatattgcttaagtttct |
44032769 |
T |
|
| Q |
114 |
gtcatgtcaaaaacacaggtgggttgtcaatttttcatgtactactgcttactccatccgattcagcatgtaaaagaaaattggatcatnnnnnnnttga |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
44032770 |
gtcatgtcaaaaacacaggtgggttgtcaatttctcatgcactactgcttactccatccgattcagcatgtaaaagaaaattggatcataaaaaaattga |
44032869 |
T |
|
| Q |
214 |
tgtatttagtctcaattttaaataagatatatcaactttagttgatctaactttctcttatataaaaagaacagagggagtattacttatattaataaat |
313 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||| ||||||| |||||||||||||||||||| |
|
|
| T |
44032870 |
tttatttagtctcaattttaaataagatatatcaactttggttgatctaactttctcttatatta---gaatagagggaatattacttatattaataaat |
44032966 |
T |
|
| Q |
314 |
tctaatttttcaaatacaaaatccgacaccataatagaaacaactccatacgaatgcccatgttgtagcaaacgtagctacatccttagctagcttcaat |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44032967 |
tctaatttttcaaatacaaaatccgacaccataatagaaacaactcaatacgaatgcccatgttgtagcaaacgtagctacatccttagctagcttcaat |
44033066 |
T |
|
| Q |
414 |
atttttgttgacataccaacatgtatcggacacgattatgaacaaat |
460 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44033067 |
atttttgttgacataccaacatgtatcggacacgattatgaacaaat |
44033113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 471 - 558
Target Start/End: Original strand, 44033271 - 44033358
Alignment:
| Q |
471 |
cctcattattgcgtcatatattaatctttttatttatttgttaaaactttacctttgggttgagctaactttataaagttaatatttt |
558 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44033271 |
cctcattattgcatcatatattaatctttttatttatttgttaaaactttacctttgggttgagctaactttataaagttaatatttt |
44033358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 277
Target Start/End: Original strand, 31748383 - 31748443
Alignment:
| Q |
216 |
tatttagtctcaattttaaataagatatatcaactttagttgatctaactttctcttatata |
277 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||||| ||| || |||||| ||||||||| |
|
|
| T |
31748383 |
tatttagtctaaattttaaacaagatatatcaacttttgtt-attaaactttatcttatata |
31748443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University