View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13942_low_6 (Length: 441)

Name: NF13942_low_6
Description: NF13942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13942_low_6
NF13942_low_6
[»] chr5 (1 HSPs)
chr5 (19-431)||(36210538-36210950)
[»] chr2 (28 HSPs)
chr2 (31-238)||(31353822-31354029)
chr2 (31-243)||(31303076-31303288)
chr2 (31-236)||(31279101-31279306)
chr2 (31-243)||(31289261-31289473)
chr2 (40-243)||(31242634-31242837)
chr2 (34-265)||(31251572-31251803)
chr2 (31-243)||(31382350-31382562)
chr2 (42-231)||(31188758-31188947)
chr2 (42-231)||(31196710-31196899)
chr2 (42-231)||(31215322-31215511)
chr2 (34-243)||(31371887-31372096)
chr2 (31-243)||(31313761-31313973)
chr2 (42-231)||(31177432-31177621)
chr2 (42-231)||(31230174-31230363)
chr2 (345-431)||(31372189-31372275)
chr2 (357-431)||(31382639-31382713)
chr2 (357-424)||(31303411-31303478)
chr2 (357-431)||(31251906-31251980)
chr2 (357-431)||(31279399-31279473)
chr2 (357-430)||(31289596-31289669)
chr2 (375-431)||(31354178-31354234)
chr2 (357-431)||(31197032-31197106)
chr2 (357-431)||(31215644-31215718)
chr2 (357-431)||(31230496-31230570)
chr2 (357-415)||(31242938-31242996)
chr2 (372-431)||(31314091-31314150)
chr2 (357-415)||(31189079-31189137)
chr2 (359-400)||(31462483-31462524)
[»] chr8 (6 HSPs)
chr8 (40-156)||(21009606-21009722)
chr8 (40-187)||(21001614-21001761)
chr8 (123-214)||(20061964-20062055)
chr8 (359-400)||(20061461-20061502)
chr8 (358-430)||(21001370-21001442)
chr8 (358-430)||(21009925-21009997)


Alignment Details
Target: chr5 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 19 - 431
Target Start/End: Original strand, 36210538 - 36210950
Alignment:
Q  19 caaagttgatcgtataggaagaattaccaaataaagcacgagcaagactgttattttccaaatattcatatatcaacattaactgatctccctccacaca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36210538 caaagttgatcgtataggaagaattaccaaataaagcacgagcaagactgttattttccaaatattcatatatcaacattaactgatctccctccacaca 36210637  T
Q  119 gcatccatagagtttaacaagatgagggtgttgcaaagccgagatcatgccgatttcatttaaaaattcgcgattcccttgctttgatttagaggaaagt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36210638 gcatccatagagtttaacaagatgagggtgttgcaaagccgagatcatgccgatttcatttaaaaattcgcgattcccttgctttgatttagaggaaagt 36210737  T
Q  219 agcttaactgctatcaatgttccatctgatagacgtccctgtattttcgaagaatgttgtatatatgaacactcgctaaataatgcttaacattataata 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  36210738 agcttaactgctatcaatgttccatctgatagacgtccctgtattttcgaagaatgttgtatatatgaacactcgctaaataatacttaacattataata 36210837  T
Q  319 aatatgtgacaactaatataatttagtatattaaacataataccttatatactggaccaaatcctccttcaccaatcttattggaaatatcaaagttatt 418  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  36210838 aatatgtgataactaatataatttagtatattaaacataataccttgtatactggaccaaatcctccttcaccaatcttattagaaatatcgaagttatt 36210937  T
Q  419 tgttgctcctttg 431  Q
    |||||||||||||    
T  36210938 tgttgctcctttg 36210950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 116; Significance: 7e-59; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 31 - 238
Target Start/End: Original strand, 31353822 - 31354029
Alignment:
Q  31 tataggaagaattaccaaataaagcacgagcaagactgttattttccaaatattcatatatcaacattaactgatctccctccacacagcatccatagag 130  Q
    |||||||| ||||||| |||||||||||||||||||| ||||| ||||| ||||||||||||| ||  || ||||||||||||||||| || ||||| ||    
T  31353822 tataggaaaaattaccgaataaagcacgagcaagactattattctccaagtattcatatatcagcaacaattgatctccctccacacaacaaccataaag 31353921  T
Q  131 tttaacaagatgagggtgttgcaaagccgagatcatgccgatttcatttaaaaattcgcgattcccttgctttgatttagaggaaagtagcttaactgct 230  Q
    ||||||||||| |||||||||||| || || |||||||| || ||||||||||| || ||||||||||||||||||||||| |||||| |||| ||||||    
T  31353922 tttaacaagataagggtgttgcaacgcagaaatcatgcctatctcatttaaaaactcacgattcccttgctttgatttagaagaaagttgcttcactgct 31354021  T
Q  231 atcaatgt 238  Q
    ||||||||    
T  31354022 atcaatgt 31354029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 31 - 243
Target Start/End: Original strand, 31303076 - 31303288
Alignment:
Q  31 tataggaagaattaccaaataaagcacgagcaagactgttattttccaaatattcatatatcaacattaactgatctccctccacacagcatccatagag 130  Q
    |||||||| ||||||||||||||||||||||||| || || |||||||| ||||||||||||| ||  || ||||||||||||||||| || || | |||    
T  31303076 tataggaaaaattaccaaataaagcacgagcaaggctattgttttccaagtattcatatatcagcaacaattgatctccctccacacaacaaccgtggag 31303175  T
Q  131 tttaacaagatgagggtgttgcaaagccgagatcatgccgatttcatttaaaaattcgcgattcccttgctttgatttagaggaaagtagcttaactgct 230  Q
    ||||||||||| ||| ||||||||||| || |||||||| || ||||||||||| || ||||||||||||||||||||||| |||||| |||| ||||||    
T  31303176 tttaacaagataaggatgttgcaaagcagaaatcatgcctatctcatttaaaaactcacgattcccttgctttgatttagaagaaagttgcttcactgct 31303275  T
Q  231 atcaatgttccat 243  Q
    | |||||||||||    
T  31303276 accaatgttccat 31303288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 31 - 236
Target Start/End: Original strand, 31279101 - 31279306
Alignment:
Q  31 tataggaagaattaccaaataaagcacgagcaagactgttattttccaaatattcatatatcaacattaactgatctccctccacacagcatccatagag 130  Q
    |||||||| |||||||||||||||||||||| ||||| || |||||||  ||||||||||||| || |||||||||||| |||||||| || ||||||||    
T  31279101 tataggaaaaattaccaaataaagcacgagcgagactattgttttccatgtattcatatatcagcaataactgatctccttccacacaacaaccatagag 31279200  T
Q  131 tttaacaagatgagggtgttgcaaagccgagatcatgccgatttcatttaaaaattcgcgattcccttgctttgatttagaggaaagtagcttaactgct 230  Q
    ||||||||||| ||| ||||||||||| || ||||| || || || ||||||||||| |||||||||||| |||||||||| |||||| |||| ||||||    
T  31279201 tttaacaagataaggatgttgcaaagcagaaatcattcctatctcgtttaaaaattcacgattcccttgcgttgatttagaagaaagttgcttcactgct 31279300  T
Q  231 atcaat 236  Q
    ||||||    
T  31279301 atcaat 31279306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 31 - 243
Target Start/End: Original strand, 31289261 - 31289473
Alignment:
Q  31 tataggaagaattaccaaataaagcacgagcaagactgttattttccaaatattcatatatcaacattaactgatctccctccacacagcatccatagag 130  Q
    |||||||| |||||||||||||||||||||||||||| || |||||||| ||||| |||| || ||| |||||||||||||||||||| || || | |||    
T  31289261 tataggaaaaattaccaaataaagcacgagcaagactattgttttccaagtattcgtataccagcatcaactgatctccctccacacaacaaccgtggag 31289360  T
Q  131 tttaacaagatgagggtgttgcaaagccgagatcatgccgatttcatttaaaaattcgcgattcccttgctttgatttagaggaaagtagcttaactgct 230  Q
    ||||||||||| ||| ||||||||||| || ||||| || || ||||||||||| || |||||||||||||||||||| || |||||| |||| ||||||    
T  31289361 tttaacaagataaggatgttgcaaagcagaaatcattcctatctcatttaaaaactcacgattcccttgctttgattttgaagaaagttgcttcactgct 31289460  T
Q  231 atcaatgttccat 243  Q
    |||||||| ||||    
T  31289461 atcaatgtcccat 31289473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 40 - 243
Target Start/End: Original strand, 31242634 - 31242837
Alignment:
Q  40 aattaccaaataaagcacgagcaagactgttattttccaaatattcatatatcaacattaactgatctccctccacacagcatccatagagtttaacaag 139  Q
    |||||||||||||||||||||||||||| || |||||||| ||||||||||||| ||  || ||||||||||||||||| || || | ||||||||||||    
T  31242634 aattaccaaataaagcacgagcaagactattgttttccaagtattcatatatcagcaacaattgatctccctccacacaacaaccgtggagtttaacaag 31242733  T
Q  140 atgagggtgttgcaaagccgagatcatgccgatttcatttaaaaattcgcgattcccttgctttgatttagaggaaagtagcttaactgctatcaatgtt 239  Q
    || ||||||||||||||| || |||||||| || || |||||||| || |||||||||||||||||||| || |||||| |||| ||||||||||||||     
T  31242734 ataagggtgttgcaaagctgaaatcatgcctatctcgtttaaaaactcacgattcccttgctttgattttgaagaaagttgcttcactgctatcaatgtc 31242833  T
Q  240 ccat 243  Q
    ||||    
T  31242834 ccat 31242837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 34 - 265
Target Start/End: Original strand, 31251572 - 31251803
Alignment:
Q  34 aggaagaattaccaaataaagcacgagcaagactgttattttccaaatattcatatatcaacattaactgatctccctccacacagcatccatagagttt 133  Q
    ||||| |||||||||||||||||||||||||||| || |||||||| ||||| |||| ||  |  |||||||||||||||||||| || || | |||| |    
T  31251572 aggaaaaattaccaaataaagcacgagcaagactattgttttccaagtattcgtataccagaaacaactgatctccctccacacaacaaccgtggagtct 31251671  T
Q  134 aacaagatgagggtgttgcaaagccgagatcatgccgatttcatttaaaaattcgcgattcccttgctttgatttagaggaaagtagcttaactgctatc 233  Q
    |||||||| ||||||||||||||| || |||||||| || || |||||||| || ||||||||||||||||||||||| |||||| |||| |||||||||    
T  31251672 aacaagataagggtgttgcaaagcagaaatcatgcctatctcgtttaaaaactcacgattcccttgctttgatttagaagaaagttgcttcactgctatc 31251771  T
Q  234 aatgttccatctgatagacgtccctgtatttt 265  Q
    ||||| |||| || || || |||||| |||||    
T  31251772 aatgtcccatttggtaaacttccctgaatttt 31251803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 31 - 243
Target Start/End: Original strand, 31382350 - 31382562
Alignment:
Q  31 tataggaagaattaccaaataaagcacgagcaagactgttattttccaaatattcatatatcaacattaactgatctccctccacacagcatccatagag 130  Q
    |||||||| | ||||||||||||||||| | |||||| || |||||||  ||||||||||||| ||  || ||||||||||||||||| || ||||||||    
T  31382350 tataggaaaagttaccaaataaagcacgggaaagactattgttttccatgtattcatatatcagcaacaattgatctccctccacacaacaaccatagag 31382449  T
Q  131 tttaacaagatgagggtgttgcaaagccgagatcatgccgatttcatttaaaaattcgcgattcccttgctttgatttagaggaaagtagcttaactgct 230  Q
    ||||||||||| ||||||||||||||| || ||||| || || || |||| ||| || ||||||||||||||||||||||| |||||| |||| ||||||    
T  31382450 tttaacaagataagggtgttgcaaagcagaaatcattcctatctcgtttagaaactcacgattcccttgctttgatttagaagaaagttgcttcactgct 31382549  T
Q  231 atcaatgttccat 243  Q
    |||||||| ||||    
T  31382550 atcaatgtcccat 31382562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 42 - 231
Target Start/End: Original strand, 31188758 - 31188947
Alignment:
Q  42 ttaccaaataaagcacgagcaagactgttattttccaaatattcatatatcaacattaactgatctccctccacacagcatccatagagtttaacaagat 141  Q
    |||||||| ||||||| |||||| || ||||||||||  ||||||||||| |  | ||||||||||||||||| |||||| |||||||| ||||| |||     
T  31188758 ttaccaaacaaagcacaagcaaggctattattttccatgtattcatatattagtaataactgatctccctccatacagcaaccatagagcttaactagac 31188857  T
Q  142 gagggtgttgcaaagccgagatcatgccgatttcatttaaaaattcgcgattcccttgctttgatttagaggaaagtagcttaactgcta 231  Q
     ||||||||||||||| || |||| |||||| ||||||| ||||||||| ||||||||||||||||||||||||||  ||||||||||||    
T  31188858 aagggtgttgcaaagcagaaatcaagccgatctcatttataaattcgcggttcccttgctttgatttagaggaaagctgcttaactgcta 31188947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 42 - 231
Target Start/End: Original strand, 31196710 - 31196899
Alignment:
Q  42 ttaccaaataaagcacgagcaagactgttattttccaaatattcatatatcaacattaactgatctccctccacacagcatccatagagtttaacaagat 141  Q
    |||||||| ||||||| | |||| || ||||||||||  ||||||||||| | || ||||||||||||||||| |||||| |||||||| ||||| |||     
T  31196710 ttaccaaacaaagcacaatcaaggctattattttccatgtattcatatattagcaataactgatctccctccatacagcaaccatagagcttaactagac 31196809  T
Q  142 gagggtgttgcaaagccgagatcatgccgatttcatttaaaaattcgcgattcccttgctttgatttagaggaaagtagcttaactgcta 231  Q
     ||||||||||||||| || |||| |||||| ||||||| ||||||||| |||||||||||||||||||| |||||  ||||||||||||    
T  31196810 aagggtgttgcaaagcagaaatcaagccgatctcatttataaattcgcggttcccttgctttgatttagaagaaagctgcttaactgcta 31196899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 42 - 231
Target Start/End: Original strand, 31215322 - 31215511
Alignment:
Q  42 ttaccaaataaagcacgagcaagactgttattttccaaatattcatatatcaacattaactgatctccctccacacagcatccatagagtttaacaagat 141  Q
    |||||||| ||||||| | |||| || ||||||||||  ||||||||||| | || ||||||||||||||||| |||||| |||||||| ||||| |||     
T  31215322 ttaccaaacaaagcacaatcaaggctattattttccatgtattcatatattagcaataactgatctccctccatacagcaaccatagagcttaactagac 31215421  T
Q  142 gagggtgttgcaaagccgagatcatgccgatttcatttaaaaattcgcgattcccttgctttgatttagaggaaagtagcttaactgcta 231  Q
     ||||||||||||||| || |||| |||||| ||||||| ||||||||| |||||||||||||||||||| |||||  ||||||||||||    
T  31215422 aagggtgttgcaaagcagaaatcaagccgatctcatttataaattcgcggttcccttgctttgatttagaagaaagctgcttaactgcta 31215511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 34 - 243
Target Start/End: Original strand, 31371887 - 31372096
Alignment:
Q  34 aggaagaattaccaaataaagcacgagcaagactgttattttccaaatattcatatatcaacattaactgatctccctccacacagcatccatagagttt 133  Q
    ||||| |||||||||||||||||||||| ||||| || |||||||| ||||||||||||| ||  || ||||||||||||||||| || || | ||||||    
T  31371887 aggaaaaattaccaaataaagcacgagctagactattgttttccaagtattcatatatcagcaacaattgatctccctccacacaacaaccgtggagttt 31371986  T
Q  134 aacaagatgagggtgttgcaaagccgagatcatgccgatttcatttaaaaattcgcgattcccttgctttgatttagaggaaagtagcttaactgctatc 233  Q
    |||||||| ||| ||||||||||| || ||||| || || || |||||||| ||||||||||||||| |||| ||||| || ||| | || |||||||||    
T  31371987 aacaagataaggatgttgcaaagcagaaatcattcctatctcgtttaaaaactcgcgattcccttgccttgaattagaagagagttgtttgactgctatc 31372086  T
Q  234 aatgttccat 243  Q
    ||||| ||||    
T  31372087 aatgtcccat 31372096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 31 - 243
Target Start/End: Original strand, 31313761 - 31313973
Alignment:
Q  31 tataggaagaattaccaaataaagcacgagcaagactgttattttccaaatattcatatatcaacattaactgatctccctccacacagcatccatagag 130  Q
    |||||||| ||||||||||||||||||||||||| || || |||||||| ||||||||||||| ||  || ||||||||||||||||| || || | |||    
T  31313761 tataggaaaaattaccaaataaagcacgagcaaggctattgttttccaagtattcatatatcagcaacaattgatctccctccacacaacaaccgtggag 31313860  T
Q  131 tttaacaagatgagggtgttgcaaagccgagatcatgccgatttcatttaaaaattcgcgattcccttgctttgatttagaggaaagtagcttaactgct 230  Q
    | ||||||||| ||| | |||||||||  | ||||| || || ||||||||||| || || |||||||||||||||| ||  |||||| |||| ||||||    
T  31313861 tctaacaagataaggatattgcaaagcataaatcattcctatctcatttaaaaactcacggttcccttgctttgattcagcagaaagttgcttcactgct 31313960  T
Q  231 atcaatgttccat 243  Q
    |||||||| ||||    
T  31313961 atcaatgtcccat 31313973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 42 - 231
Target Start/End: Original strand, 31177432 - 31177621
Alignment:
Q  42 ttaccaaataaagcacgagcaagactgttattttccaaatattcatatatcaacattaactgatctccctccacacagcatccatagagtttaacaagat 141  Q
    |||||||| ||||||| |||||| || ||||||||||  ||||||||||| | || ||||||||||||||||| |||||| || ||||| ||||| |||     
T  31177432 ttaccaaacaaagcacaagcaaggctattattttccatgtattcatatattagcaataactgatctccctccatacagcaaccgtagagcttaactagac 31177531  T
Q  142 gagggtgttgcaaagccgagatcatgccgatttcatttaaaaattcgcgattcccttgctttgatttagaggaaagtagcttaactgcta 231  Q
     ||||||||||||||| || |||| |||||| || |||| ||||||||| |||||||||||||||||||| |||||  ||||||| ||||    
T  31177532 aagggtgttgcaaagcagaaatcaagccgatctcgtttataaattcgcggttcccttgctttgatttagaagaaagctgcttaacagcta 31177621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 42 - 231
Target Start/End: Original strand, 31230174 - 31230363
Alignment:
Q  42 ttaccaaataaagcacgagcaagactgttattttccaaatattcatatatcaacattaactgatctccctccacacagcatccatagagtttaacaagat 141  Q
    |||||||| ||||||| |||||| || ||||||||||  ||||||||||||| ||  |||||||||||||||| ||| || |||||||| ||||| |||     
T  31230174 ttaccaaacaaagcacaagcaaggctattattttccatgtattcatatatcagcagcaactgatctccctccatacaacaaccatagagcttaactagac 31230273  T
Q  142 gagggtgttgcaaagccgagatcatgccgatttcatttaaaaattcgcgattcccttgctttgatttagaggaaagtagcttaactgcta 231  Q
     ||| ||||||||||| || |||| |||||| ||||| | ||||||||| |||||||||||||||||||| |||||  ||||||||||||    
T  31230274 aaggatgttgcaaagcagaaatcaagccgatctcattaataaattcgcggttcccttgctttgatttagaagaaagctgcttaactgcta 31230363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 345 - 431
Target Start/End: Original strand, 31372189 - 31372275
Alignment:
Q  345 tatattaaacataataccttatatactggaccaaatcctccttcaccaatcttattggaaatatcaaagttatttgttgctcctttg 431  Q
    ||||||| ||| |||||||| || || ||||||||||| ||||| |||||||||||||||||||||||||||||||| ||| |||||    
T  31372189 tatattatacaaaataccttgtacacgggaccaaatccaccttcgccaatcttattggaaatatcaaagttatttgtcgctgctttg 31372275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 357 - 431
Target Start/End: Original strand, 31382639 - 31382713
Alignment:
Q  357 aataccttatatactggaccaaatcctccttcaccaatcttattggaaatatcaaagttatttgttgctcctttg 431  Q
    |||||||| || || ||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||    
T  31382639 aataccttgtacacaggaccaaatcctccttctccaatcttattggaaatatcgaagttatttgttgctgctttg 31382713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 357 - 424
Target Start/End: Original strand, 31303411 - 31303478
Alignment:
Q  357 aataccttatatactggaccaaatcctccttcaccaatcttattggaaatatcaaagttatttgttgc 424  Q
    |||||||| || || || ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  31303411 aataccttgtacacggggccaaatcctccttcaccaatcttattggaaatatcgaagttatttgttgc 31303478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 357 - 431
Target Start/End: Original strand, 31251906 - 31251980
Alignment:
Q  357 aataccttatatactggaccaaatcctccttcaccaatcttattggaaatatcaaagttatttgttgctcctttg 431  Q
    |||||||| || || ||||| ||||||||||| |||||||||||||||||||||||||||||||| ||| |||||    
T  31251906 aataccttgtacacaggaccgaatcctccttccccaatcttattggaaatatcaaagttatttgtcgctgctttg 31251980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 357 - 431
Target Start/End: Original strand, 31279399 - 31279473
Alignment:
Q  357 aataccttatatactggaccaaatcctccttcaccaatcttattggaaatatcaaagttatttgttgctcctttg 431  Q
    |||||||| || || ||||||||||| ||||| |||||||||||||||||||||||||||||||| ||| |||||    
T  31279399 aataccttgtacacgggaccaaatccaccttcgccaatcttattggaaatatcaaagttatttgtcgctgctttg 31279473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 357 - 430
Target Start/End: Original strand, 31289596 - 31289669
Alignment:
Q  357 aataccttatatactggaccaaatcctccttcaccaatcttattggaaatatcaaagttatttgttgctccttt 430  Q
    |||||||| || || ||||||||||||||||| |||||||||||||||| ||| ||||||| ||||||| ||||    
T  31289596 aataccttgtacacaggaccaaatcctccttctccaatcttattggaaacatcgaagttatctgttgctgcttt 31289669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 375 - 431
Target Start/End: Original strand, 31354178 - 31354234
Alignment:
Q  375 ccaaatcctccttcaccaatcttattggaaatatcaaagttatttgttgctcctttg 431  Q
    |||||||| ||||| |||||||| ||||||||||||||||||||||||||| |||||    
T  31354178 ccaaatcccccttctccaatcttgttggaaatatcaaagttatttgttgctgctttg 31354234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 357 - 431
Target Start/End: Original strand, 31197032 - 31197106
Alignment:
Q  357 aataccttatatactggaccaaatcctccttcaccaatcttattggaaatatcaaagttatttgttgctcctttg 431  Q
    |||||||| || || |||||||| |||||||| |||||||||| || |||||||||||| ||||||||| |||||    
T  31197032 aataccttgtaaacaggaccaaaccctccttctccaatcttataggcaatatcaaagttgtttgttgctgctttg 31197106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 357 - 431
Target Start/End: Original strand, 31215644 - 31215718
Alignment:
Q  357 aataccttatatactggaccaaatcctccttcaccaatcttattggaaatatcaaagttatttgttgctcctttg 431  Q
    |||||||| || || |||||||| |||||||| |||||||||| || |||||||||||| ||||||||| |||||    
T  31215644 aataccttgtaaacaggaccaaaccctccttctccaatcttataggcaatatcaaagttgtttgttgctgctttg 31215718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 357 - 431
Target Start/End: Original strand, 31230496 - 31230570
Alignment:
Q  357 aataccttatatactggaccaaatcctccttcaccaatcttattggaaatatcaaagttatttgttgctcctttg 431  Q
    |||||||| || || |||||||| ||||||||||||||||||| || |||||||||||| || |||||| |||||    
T  31230496 aataccttgtaaacaggaccaaaccctccttcaccaatcttataggcaatatcaaagttgttagttgctgctttg 31230570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 415
Target Start/End: Original strand, 31242938 - 31242996
Alignment:
Q  357 aataccttatatactggaccaaatcctccttcaccaatcttattggaaatatcaaagtt 415  Q
    |||||||| || || ||||||||||||||||| |||||||||| || ||||||||||||    
T  31242938 aataccttgtacacaggaccaaatcctccttctccaatcttataggcaatatcaaagtt 31242996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 431
Target Start/End: Original strand, 31314091 - 31314150
Alignment:
Q  372 ggaccaaatcctccttcaccaatcttattggaaatatcaaagttatttgttgctcctttg 431  Q
    |||||||| |||||||| ||||||||||| || | ||||||||| ||||||||| |||||    
T  31314091 ggaccaaaacctccttctccaatcttatttgagacatcaaagttgtttgttgctgctttg 31314150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 415
Target Start/End: Original strand, 31189079 - 31189137
Alignment:
Q  357 aataccttatatactggaccaaatcctccttcaccaatcttattggaaatatcaaagtt 415  Q
    |||||||| || || |||||||| |||||||| |||||||||| || ||||||||||||    
T  31189079 aataccttgtaaaccggaccaaaccctccttctccaatcttataggcaatatcaaagtt 31189137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 400
Target Start/End: Complemental strand, 31462524 - 31462483
Alignment:
Q  359 taccttatatactggaccaaatcctccttcaccaatcttatt 400  Q
    |||||| || ||||||||||||||||||||||| ||||||||    
T  31462524 taccttgtaaactggaccaaatcctccttcacctatcttatt 31462483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 40 - 156
Target Start/End: Original strand, 21009606 - 21009722
Alignment:
Q  40 aattaccaaataaagcacgagcaagactgttattttccaaatattcatatatcaacattaactgatctccctccacacagcatccatagagtttaacaag 139  Q
    |||||||||||| |||| |||||||||| || |||||||  ||||||||||||||||  ||||||||  | |||| |||| | |||||||| ||||||||    
T  21009606 aattaccaaatagagcatgagcaagactattgttttccatgtattcatatatcaacaacaactgatcatcttccatacagaagccatagagcttaacaag 21009705  T
Q  140 atgagggtgttgcaaag 156  Q
    ||  |||||||| ||||    
T  21009706 attggggtgttgtaaag 21009722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 40 - 187
Target Start/End: Complemental strand, 21001761 - 21001614
Alignment:
Q  40 aattaccaaataaagcacgagcaagactgttattttccaaatattcatatatcaacattaactgatctccctccacacagcatccatagagtttaacaag 139  Q
    |||||||||||| |||| ||||||| || || |||||||  ||||||||||||||||  ||||||||  | |||| |||| | |||||||| ||||||||    
T  21001761 aattaccaaatagagcatgagcaaggctattgttttccatgtattcatatatcaacaacaactgatcatcttccatacagaagccatagagcttaacaag 21001662  T
Q  140 atgagggtgttgcaaagccgagatcatgccgatttcatttaaaaattc 187  Q
    ||  |||||||| ||||  || |||||||| || ||||| | ||||||    
T  21001661 attggggtgttgtaaagtagaaatcatgccaatctcattaataaattc 21001614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 123 - 214
Target Start/End: Complemental strand, 20062055 - 20061964
Alignment:
Q  123 ccatagagtttaacaagatgagggtgttgcaaagccgagatcatgccgatttcatttaaaaattcgcgattcccttgctttgatttagagga 214  Q
    |||||||| ||||||||||  || || |||||||| || ||||| |||||||| || | |||||||||||||||||| |||||||| |||||    
T  20062055 ccatagagcttaacaagatttggatgctgcaaagcagatatcattccgatttcgttaacaaattcgcgattcccttggtttgattttgagga 20061964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 400
Target Start/End: Complemental strand, 20061502 - 20061461
Alignment:
Q  359 taccttatatactggaccaaatcctccttcaccaatcttatt 400  Q
    |||||| |||||||| |||||||| |||||||||||||||||    
T  20061502 taccttgtatactggcccaaatcccccttcaccaatcttatt 20061461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 430
Target Start/End: Complemental strand, 21001442 - 21001370
Alignment:
Q  358 ataccttatatactggaccaaatcctccttcaccaatcttattggaaatatcaaagttatttgttgctccttt 430  Q
    ||||||| || |||||||||||||||||||| ||||||||   |||   ||||||||| ||||||||| ||||    
T  21001442 ataccttgtaaactggaccaaatcctccttctccaatcttgaaggattcatcaaagttgtttgttgctgcttt 21001370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 430
Target Start/End: Original strand, 21009925 - 21009997
Alignment:
Q  358 ataccttatatactggaccaaatcctccttcaccaatcttattggaaatatcaaagttatttgttgctccttt 430  Q
    ||||||| || |||||||||||||||||||| ||||||||   |||   ||||||||| ||||||||| ||||    
T  21009925 ataccttgtaaactggaccaaatcctccttctccaatcttgaaggattcatcaaagttgtttgttgctgcttt 21009997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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