View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13942_low_7 (Length: 389)
Name: NF13942_low_7
Description: NF13942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13942_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 10 - 373
Target Start/End: Complemental strand, 14960187 - 14959824
Alignment:
| Q |
10 |
ttaaattatggtgtgcaaaattctatcttgttcatttctgtagtttccacaagaaaaataaatgttagcattcttgagaaaatgaagaatgaaaatatac |
109 |
Q |
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| T |
14960187 |
ttaaattatggtgtgcaaaattctatcttgttcatttctgtagtttccacaagaaaaataaatgttagcattcttgagaaaatgaagaatgaaaatatac |
14960088 |
T |
|
| Q |
110 |
tcactttgataaatgcagtttatttcaccctgcagtccacttaggctgacatcactgcattaaagcagcattatggttatgcactcaaactccacatgac |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
14960087 |
tcactttgataaatgcagtttatttcaccctgcagtccacttaggctgacatcactgcattaaagcagcattatggttatgaactcaaactccacatgac |
14959988 |
T |
|
| Q |
210 |
atcactgatgtgggaaaaaattaagttaacaagactgccaattctatatagtaagtttgaataaatagcttaattaagaacttagagcttgtttggattg |
309 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14959987 |
atcactgatgtgggaaaaaagtaagttaacaagactgccaattctatatagtaagtttgaataaatagcttaattaagaacttagagcttgtttggattg |
14959888 |
T |
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| Q |
310 |
aattatttgaacctgacataagcacttgtgggactgtttgagagagtttgtggcatcaacttat |
373 |
Q |
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| T |
14959887 |
aattatttgaacctgacataagcacttgtgggactgtttgagagagtttgtggcatcaacttat |
14959824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 358
Target Start/End: Original strand, 1084088 - 1084124
Alignment:
| Q |
322 |
ctgacataagcacttgtgggactgtttgagagagttt |
358 |
Q |
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| T |
1084088 |
ctgacataagcacttgtgaaactgtttgagagagttt |
1084124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 358
Target Start/End: Complemental strand, 22667524 - 22667488
Alignment:
| Q |
322 |
ctgacataagcacttgtgggactgtttgagagagttt |
358 |
Q |
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|||||||||||||||||| |||||||||||||||||| |
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| T |
22667524 |
ctgacataagcacttgtgagactgtttgagagagttt |
22667488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 358
Target Start/End: Complemental strand, 22724163 - 22724127
Alignment:
| Q |
322 |
ctgacataagcacttgtgggactgtttgagagagttt |
358 |
Q |
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| T |
22724163 |
ctgacataagcacttgtgagactgtttgagagagttt |
22724127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 327 - 355
Target Start/End: Original strand, 11041180 - 11041208
Alignment:
| Q |
327 |
ataagcacttgtgggactgtttgagagag |
355 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
11041180 |
ataagcacttgtgggactgtttgagagag |
11041208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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