View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13942_low_9 (Length: 346)
Name: NF13942_low_9
Description: NF13942
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13942_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 5e-84; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 19 - 273
Target Start/End: Original strand, 41981350 - 41981601
Alignment:
| Q |
19 |
ttaatgtggtatgaggacaagttacctgaaaatattttgaatggaaatagttaatagtaatttnnnnnnnnnnngtgtttcttcgataagtttgtcgaaa |
118 |
Q |
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| T |
41981350 |
ttaatgtggtatgaggacaagttacctgaaaatattttgaatggaaatagttaatagtaattaaaaaaaaaaa--tgtttctttgataagtttgtcgaaa |
41981447 |
T |
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| Q |
119 |
ttacgatgagttggtgtggaatttcattttgcaaaagttcattttgtatcttttgcaagatgatatgagtcacttacgtatatttcgacaaactcacctg |
218 |
Q |
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| T |
41981448 |
ttacgatgagttggtgtcgaatttcattttgcaaaagttcattttgtat-ttttgcaagatggtatgactcacttacgtatatttcgataaactcatttg |
41981546 |
T |
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| Q |
219 |
ataccgaacatacaaaagtattcggtagagtagtagttaccagaggaaaaagatg |
273 |
Q |
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| T |
41981547 |
atatcgaacatacaaaagtactcggtagagtagtagttaccaaagggaaaagatg |
41981601 |
T |
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