View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13943_high_11 (Length: 497)
Name: NF13943_high_11
Description: NF13943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13943_high_11 |
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| [»] scaffold0076 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-119; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 14 - 231
Target Start/End: Complemental strand, 38310536 - 38310319
Alignment:
| Q |
14 |
aaagcaacatgcaaaagttgctgaaactacaagcaacaataaaagccccattttgctggtaataacagcaatggtaatcatacgatacatgtgagatata |
113 |
Q |
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| T |
38310536 |
aaagcaacatgcaaaagttgctgaaactacaagcaacaataaaagccccattttgctggtaataacagcaatggtaatcatacgatacatgtgagatata |
38310437 |
T |
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| Q |
114 |
taagatagcagtgacagagagagagaaaccaagtgaaataaggtgcaagaacaatacctgaaatatgttcccattcaagtagatttacatactagtttca |
213 |
Q |
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| T |
38310436 |
taagatagcagtgacagagagagagaaaccaagtgaaataaggtgcaagaacaatacctgaaatatgttcccattcaagtagatttacatactagtttca |
38310337 |
T |
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| Q |
214 |
tccaacattgaacattag |
231 |
Q |
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|||||||||||||||||| |
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| T |
38310336 |
tccaacattgaacattag |
38310319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 294 - 485
Target Start/End: Complemental strand, 38310256 - 38310062
Alignment:
| Q |
294 |
tctaagtccgccagtaagtccaaaaaacatagcctaacaaccatatatagttttaattttgcaaaccataa---caaaacaaacatcacaaaacaaagtt |
390 |
Q |
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| T |
38310256 |
tctaagtccgccagtaagtccaaaaaacatagcctaacaaccatatatagttttaattttgcaaaccataaagccaaaacaaacatcacaaaacaaagtt |
38310157 |
T |
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| Q |
391 |
aaataaagacaagataatcaattgtcatcttcaaaatcaaaatcagtagatgcttgctccgtttgtacatcaccatcaactttcttcattgtttc |
485 |
Q |
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| T |
38310156 |
aaataaagacaagataatcaattgtcatcttcaaaatcaaaatcagtagatgcttgctccgtttgtacatcaccatcaactttcttcattgtttc |
38310062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 38301761 - 38301721
Alignment:
| Q |
144 |
aagtgaaataaggtgcaagaacaatacctgaaatatgttcc |
184 |
Q |
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| T |
38301761 |
aagtgaaataaggtgcaagaacaatacccgaaatttgttcc |
38301721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 353
Target Start/End: Complemental strand, 38307475 - 38307431
Alignment:
| Q |
309 |
aagtccaaaaaacatagcctaacaaccatatatagttttaatttt |
353 |
Q |
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| T |
38307475 |
aagtctaaaaaacataacctaacaaccgtatatagttttaatttt |
38307431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 353
Target Start/End: Complemental strand, 38314859 - 38314818
Alignment:
| Q |
312 |
tccaaaaaacatagcctaacaaccatatatagttttaatttt |
353 |
Q |
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| T |
38314859 |
tccagaaaacataacctaacaaccatatatagtcttaatttt |
38314818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 321 - 412
Target Start/End: Original strand, 38849083 - 38849177
Alignment:
| Q |
321 |
catagcctaacaaccatatatagttttaattttgcaaaccataa---caaaacaaacatcacaaaacaaagttaaataaagacaagataatcaat |
412 |
Q |
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| T |
38849083 |
cataacctaacaaccaaatatagttttaattttttaaaccataaatccaaaataaacatgataaaccaaagttaaataaatacaagcaaatcaat |
38849177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0076 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0076
Description:
Target: scaffold0076; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 14473 - 14407
Alignment:
| Q |
14 |
aaagcaacatgcaaaagttgctgaaactacaagcaacaataaaagccccattttgctggtaataaca |
80 |
Q |
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| T |
14473 |
aaagcagcatgctaaagttgctcaaactacaagcaacaacataggcccaattttgctggtaacaaca |
14407 |
T |
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