View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13943_high_12 (Length: 479)

Name: NF13943_high_12
Description: NF13943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13943_high_12
NF13943_high_12
[»] chr7 (11 HSPs)
chr7 (13-460)||(25706075-25706518)
chr7 (182-284)||(2351083-2351185)
chr7 (35-164)||(21471412-21471541)
chr7 (183-251)||(24596963-24597031)
chr7 (183-268)||(3268908-3268993)
chr7 (209-247)||(5214035-5214073)
chr7 (186-244)||(5312752-5312810)
chr7 (183-269)||(8308973-8309059)
chr7 (287-328)||(14649687-14649728)
chr7 (183-269)||(7372508-7372593)
chr7 (213-344)||(10253607-10253738)
[»] chr4 (6 HSPs)
chr4 (183-390)||(16442078-16442286)
chr4 (183-345)||(13275607-13275772)
chr4 (183-318)||(31859793-31859928)
chr4 (182-258)||(20044264-20044340)
chr4 (181-359)||(30624951-30625129)
chr4 (281-318)||(19601983-19602020)
[»] chr1 (10 HSPs)
chr1 (183-327)||(15416856-15417001)
chr1 (224-389)||(31319433-31319597)
chr1 (181-286)||(13807678-13807782)
chr1 (183-317)||(25727802-25727937)
chr1 (183-317)||(25736210-25736345)
chr1 (183-345)||(26102144-26102306)
chr1 (287-377)||(27461014-27461104)
chr1 (197-348)||(18795282-18795434)
chr1 (300-346)||(34935200-34935246)
chr1 (187-318)||(52271137-52271268)
[»] chr2 (13 HSPs)
chr2 (183-373)||(39730534-39730724)
chr2 (182-359)||(31450043-31450221)
chr2 (239-388)||(24047525-24047675)
chr2 (224-348)||(17152282-17152406)
chr2 (183-318)||(18236195-18236330)
chr2 (107-165)||(29769414-29769472)
chr2 (290-358)||(17862604-17862672)
chr2 (175-258)||(32703887-32703970)
chr2 (199-269)||(15454480-15454550)
chr2 (183-267)||(27417206-27417291)
chr2 (288-325)||(31274148-31274185)
chr2 (197-265)||(17415108-17415176)
chr2 (183-251)||(19541124-19541192)
[»] chr8 (10 HSPs)
chr8 (181-393)||(13529923-13530135)
chr8 (181-393)||(13619462-13619674)
chr8 (183-377)||(28260122-28260317)
chr8 (11-170)||(41505859-41506017)
chr8 (183-318)||(16052169-16052305)
chr8 (40-164)||(16052648-16052772)
chr8 (183-269)||(28074600-28074686)
chr8 (183-251)||(14424772-14424840)
chr8 (183-264)||(30543848-30543929)
chr8 (183-251)||(31436566-31436634)
[»] chr6 (9 HSPs)
chr6 (183-359)||(9943001-9943177)
chr6 (201-382)||(16439563-16439744)
chr6 (183-260)||(13835688-13835765)
chr6 (183-272)||(13830770-13830862)
chr6 (19-67)||(8322597-8322645)
chr6 (219-261)||(24968883-24968925)
chr6 (197-318)||(26499739-26499860)
chr6 (287-348)||(32930308-32930368)
chr6 (13-69)||(13831253-13831309)
[»] chr3 (6 HSPs)
chr3 (175-353)||(21813565-21813745)
chr3 (183-271)||(28206076-28206163)
chr3 (240-318)||(19219103-19219181)
chr3 (224-324)||(21829019-21829119)
chr3 (183-331)||(25188844-25188993)
chr3 (183-267)||(26387788-26387872)
[»] chr5 (7 HSPs)
chr5 (183-317)||(26070561-26070695)
chr5 (287-382)||(17695291-17695386)
chr5 (287-382)||(24130819-24130914)
chr5 (183-318)||(11274222-11274358)
chr5 (241-318)||(18178247-18178324)
chr5 (183-346)||(11997757-11997922)
chr5 (245-318)||(26329962-26330034)
[»] scaffold0011 (1 HSPs)
scaffold0011 (281-318)||(228079-228116)


Alignment Details
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 13 - 460
Target Start/End: Original strand, 25706075 - 25706518
Alignment:
Q  13 taatactgattttgaatgaccgtttataattgcttcaaatacatagcaaggtacaattacataatgattgaagtgtgtagaatgtcttcaccaaccccac 112  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||| ||||||| |||    
T  25706075 taatactgactttgaatgaccgtttataattgcttcaaatacatagcaaggcacaattacataatgactgaagtatgtagaatgtcttgaccaacctcac 25706174  T
Q  113 tgaatttaggatatacatgcatgtgtcttggaattgaacgtggttgaaagtataattaattatcttctctaatcatgcaactcaataggtgttttaagtc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    |||| |||||| ||||||||| ||||||||||||||||    
T  25706175 tgaatttaggatatacatgcatgtgtcttggaattgaacgtggttgaaagtatgatta----tcttttctaatgatgcaactccataggtgttttaagtc 25706270  T
Q  213 tttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagggatttaaagagtgaagacaatggttcttggaaggtttttgaag 312  Q
    ||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25706271 tttttgttgctaaatcttgtaattcggaaaaacaagacacctcatgaaggatcaagggatttaaagagtgaagacaatggttcttggaaggtttttgaag 25706370  T
Q  313 acaatataagttgggggaaatttatcccaagttccatgacaattcaatatgaaagaacgctcgaagaaggataaaaaactacatgattcacccctaaggg 412  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||| |||||||| | ||||    
T  25706371 acaatataagttggggaaaattcatcccaagttccatgacaattcaatacggaagaacgctcgaagaaggacaaaaaactacataattcacccttgaggg 25706470  T
Q  413 gagttgtgacttttcatggtatttttgttggctaaatttgccaggttt 460  Q
    ||||||||||||||| |||||||||||||| |||||| || |||||||    
T  25706471 gagttgtgacttttcgtggtatttttgttgactaaatctgtcaggttt 25706518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 182 - 284
Target Start/End: Original strand, 2351083 - 2351185
Alignment:
Q  182 taatcatgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagggatttaaagagt 281  Q
    ||||||||| |||  |||||||| |||||||||||| |||||||||| |||||||||| |||| |||||| |  ||||| ||| || |||||| |||| |    
T  2351083 taatcatgcgactttataggtgtcttaagtctttttattgataaatcgtgtaattcagaaaaagaagacaacaaatgaaagatgaatggatttgaagaat 2351182  T
Q  282 gaa 284  Q
    |||    
T  2351183 gaa 2351185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 35 - 164
Target Start/End: Original strand, 21471412 - 21471541
Alignment:
Q  35 tttataattgcttcaaatacatagcaaggtacaattacataatgattgaagtgtgtagaatgtcttcaccaaccccactgaatttaggatatacatgcat 134  Q
    |||| |||||||||||   |||||||||||||||| |||| | || || ||| ||   |||| ||| |||| ||||| || |||||||| | |||| |||    
T  21471412 tttagaattgcttcaatctcatagcaaggtacaatcacatgacgactggagtatggcaaatgccttgaccagccccattggatttaggagacacatacat 21471511  T
Q  135 gtgtcttggaattgaacgtggttgaaagta 164  Q
    || ||||||||||| |||||||||||||||    
T  21471512 gtatcttggaattgtacgtggttgaaagta 21471541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 24597031 - 24596963
Alignment:
Q  183 aatcatgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagaca 251  Q
    |||||||||||||  ||||||||||||||||||||  ||| ||||| ||||| || |||||||||||||    
T  24597031 aatcatgcaactccgtaggtgttttaagtctttttagtgagaaatcgtgtaaatcggcaaaacaagaca 24596963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 183 - 268
Target Start/End: Complemental strand, 3268993 - 3268908
Alignment:
Q  183 aatcatgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaag 268  Q
    ||||||||||||   || |||||||||||||||||  ||| ||||| ||||| || ||||||||||| | | ||||||||||||||    
T  3268993 aatcatgcaacttcgtatgtgttttaagtctttttagtgagaaatcatgtaaatcggcaaaacaagatatcacatgaaggatcaag 3268908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 247
Target Start/End: Complemental strand, 5214073 - 5214035
Alignment:
Q  209 agtctttttgttgataaatcttgtaattcagcaaaacaa 247  Q
    ||||||||| |||||||||| ||||||||||||||||||    
T  5214073 agtctttttattgataaatcatgtaattcagcaaaacaa 5214035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 244
Target Start/End: Complemental strand, 5312810 - 5312752
Alignment:
Q  186 catgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaa 244  Q
    |||||||||| ||||||||||| |||||||||  ||||||||| ||||| || ||||||    
T  5312810 catgcaactccataggtgttttgagtctttttagtgataaatcatgtaaatcggcaaaa 5312752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 269
Target Start/End: Complemental strand, 8309059 - 8308973
Alignment:
Q  183 aatcatgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagg 269  Q
    ||||||||||||| |||  |||||| |||||||||  | | ||||| ||||| |||||||||||||||| | | ||||| |||||||    
T  8309059 aatcatgcaactccatacatgttttgagtctttttagtaagaaatcatgtaaatcagcaaaacaagacatcacgtgaagaatcaagg 8308973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 328
Target Start/End: Original strand, 14649687 - 14649728
Alignment:
Q  287 caatggttcttggaaggtttttgaagacaatataagttgggg 328  Q
    |||||||| || |||||||||||||||||||| |||||||||    
T  14649687 caatggttattagaaggtttttgaagacaatacaagttgggg 14649728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 183 - 269
Target Start/End: Complemental strand, 7372593 - 7372508
Alignment:
Q  183 aatcatgcaactcaataggtgttttaagt-ctttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagg 269  Q
    ||||||||||||  ||||||||||| |||  |||||  ||| ||||||||||| |||||||| ||||| |  ||||||||||||||||    
T  7372593 aatcatgcaacttcataggtgttttcagtgttttttagtgagaaatcttgtaaatcagcaaatcaagata--tcatgaaggatcaagg 7372508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 213 - 344
Target Start/End: Complemental strand, 10253738 - 10253607
Alignment:
Q  213 tttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagggatttaaagagtgaaga-caatggttcttggaaggtttttgaa 311  Q
    ||||| |||||||||| | |||||  ||||| ||||||||  |||| ||||| | || | || |||| |||||| ||||| | |||  | ||||||||||    
T  10253738 tttttattgataaatcatataattgggcaaagcaagacactacatggaggattatggaagttgaagattgaagatcaatgatacttatagggtttttgaa 10253639  T
Q  312 gacaatataagttgggggaaatttatcccaagt 344  Q
    ||||||| ||||| ||||||||| |||||||||    
T  10253638 gacaatacaagtt-ggggaaattcatcccaagt 10253607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 4e-33; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 183 - 390
Target Start/End: Complemental strand, 16442286 - 16442078
Alignment:
Q  183 aatcatgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagggatttaaagagtg 282  Q
    ||||||||||||| ||| ||||||| | |||||||  ||||||||| |||||||| | |||||| |||||  |||| ||||| ||||||||| || | ||    
T  16442286 aatcatgcaactccataagtgttttgactctttttaatgataaatcatgtaattcggtaaaacatgacactgcatggaggattaagggatttgaataatg 16442187  T
Q  283 aaga-caatggttcttggaaggtttttgaagacaatataagttgggggaaatttatcccaagttccatgacaattcaatatgaaagaacgctcgaagaag 381  Q
    |||| | || || |||||||||||||||||||||||| || ||||||||||||||||| |||||||| |  | ||||| | | ||||||||||||| |||    
T  16442186 aagatcgattgtacttggaaggtttttgaagacaatacaatttgggggaaatttatccaaagttccaagcaatttcaagacggaagaacgctcgaaaaag 16442087  T
Q  382 gataaaaaa 390  Q
    || ||||||    
T  16442086 gacaaaaaa 16442078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 183 - 345
Target Start/End: Complemental strand, 13275772 - 13275607
Alignment:
Q  183 aatcatgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagggatttaaagag-- 280  Q
    |||||| ||||||  |||||||||| ||||||||| ||| |||||| |||||||| ||||| ||| ||||| || ||||||| ||||||| | || |       
T  13275772 aatcatacaactctgtaggtgttttgagtctttttattgctaaatcatgtaattcggcaaagcaatacaccacacgaaggattaagggatatgaatataa 13275673  T
Q  281 tgaaga-caatggttcttggaaggtttttgaagacaatataagttgggggaaatttatcccaagtt 345  Q
    |||||| ||||||||||| |||| ||||||||||||||| ||||||||| ||||| ||||| ||||    
T  13275672 tgaagatcaatggttctttgaagttttttgaagacaatacaagttggggaaaattcatccctagtt 13275607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 183 - 318
Target Start/End: Complemental strand, 31859928 - 31859793
Alignment:
Q  183 aatcatgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagggatttaaagagtg 282  Q
    ||||||||||||  ||||||||||| |||||||||  ||| ||||| ||||| ||||||||||||||||||   ||||||||| | |||| | || | ||    
T  31859928 aatcatgcaactgcataggtgttttgagtctttttagtgagaaatcatgtaaatcagcaaaacaagacaccaggtgaaggatcga-ggatatgaatattg 31859830  T
Q  283 aaga-caatggttcttggaaggtttttgaagacaata 318  Q
    |||| ||||||||||| |||||| |||||||||||||    
T  31859829 aagatcaatggttcttagaaggtatttgaagacaata 31859793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 182 - 258
Target Start/End: Original strand, 20044264 - 20044340
Alignment:
Q  182 taatcatgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatg 258  Q
    |||||||||||||| ||| || |||| ||||||||| |||| ||||| |||||||||| ||| ||||||||| ||||    
T  20044264 taatcatgcaactccatatgtattttgagtctttttattgaaaaatcatgtaattcagtaaagcaagacaccacatg 20044340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 181 - 359
Target Start/End: Original strand, 30624951 - 30625129
Alignment:
Q  181 ctaatcatgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagggatttaaagag 280  Q
    |||||||||||| |  ||||||||||| ||||||||| |||| ||||| ||||||||  ||||  |||||||  | || |||||||| |||||| ||||     
T  30624951 ctaatcatgcaatttcataggtgttttgagtctttttattgaaaaatcatgtaattctacaaagtaagacactgcgtggaggatcaaaggatttgaagaa 30625050  T
Q  281 tgaaga-caatggttcttggaaggtttttgaagacaatataagttgggggaaatttatcccaagttccatgacaattcaa 359  Q
    |||||| ||||| | |||  || | ||||||||||| || ||| | ||| ||||| |||||||||| || |||| |||||    
T  30625051 tgaagatcaatgttacttaaaaagattttgaagacagtacaagct-gggaaaattcatcccaagtttcaagacatttcaa 30625129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 318
Target Start/End: Original strand, 19601983 - 19602020
Alignment:
Q  281 tgaagacaatggttcttggaaggtttttgaagacaata 318  Q
    |||||||||||||||||  |||||||||||||||||||    
T  19601983 tgaagacaatggttcttaaaaggtttttgaagacaata 19602020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 183 - 327
Target Start/End: Complemental strand, 15417001 - 15416856
Alignment:
Q  183 aatcatgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagggatttaaagagtg 282  Q
    ||||||||||||  ||||||||||| ||||||||| | |  ||||| |||||||| ||||| ||||||||| |||||||||||||||||| | |||| ||    
T  15417001 aatcatgcaactgtataggtgttttgagtctttttatagtcaaatcatgtaattcggcaaagcaagacaccacatgaaggatcaagggatatgaagaatg 15416902  T
Q  283 aaga-caatggttcttggaaggtttttgaagacaatataagttggg 327  Q
    |||| |||||||||||  ||||||||| ||||||||  ||||||||    
T  15416901 aagatcaatggttcttataaggtttttaaagacaatgcaagttggg 15416856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 224 - 389
Target Start/End: Complemental strand, 31319597 - 31319433
Alignment:
Q  224 aaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagggatttaaagagtgaaga-caatggttcttggaaggtttttgaagacaatataag 322  Q
    ||||| |||||||  | ||| ||||||||| ||| |||||||||| ||| | || | |||||| ||||||||||| |||| ||||||||||||||  |||    
T  31319597 aaatcatgtaatttggaaaagcaagacaccacat-aaggatcaagagatatgaataatgaagatcaatggttcttagaagttttttgaagacaatgcaag 31319499  T
Q  323 ttgggggaaatttatcccaagttccatgacaattcaatatgaaagaacgctcgaagaaggataaaaa 389  Q
    | |||| |||||||||||||||| || | || ||||| ||| || |||||||||| |||||| ||||    
T  31319498 tcgggg-aaatttatcccaagtttcaaggcatttcaagatggaaaaacgctcgaaaaaggatgaaaa 31319433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 181 - 286
Target Start/End: Complemental strand, 13807782 - 13807678
Alignment:
Q  181 ctaatcatgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagggatttaaagag 280  Q
    ||||||||||||||  |||| |||||| |||||||| |||| ||| |  |||||||||||||| ||||||| | ||||||||||||||| |||| ||||     
T  13807782 ctaatcatgcaacttcatagttgttttgagtcttttagttgttaagtgatgtaattcagcaaagcaagaca-cacatgaaggatcaaggtatttgaagaa 13807684  T
Q  281 tgaaga 286  Q
    ||||||    
T  13807683 tgaaga 13807678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 183 - 317
Target Start/End: Complemental strand, 25727937 - 25727802
Alignment:
Q  183 aatcatgcaactcaataggtgttttaagtctttt-tgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagggatttaaagagt 281  Q
    ||||||||||||||||||||||||| ||| |||| |  ||| ||||| ||||| ||  |||| ||| | | | |||||||||| |||| || | |||| |    
T  25727937 aatcatgcaactcaataggtgttttgagtgttttgtagtgagaaatcatgtaaatcgacaaatcaatatatcacatgaaggattaagg-atatgaagatt 25727839  T
Q  282 gaaga-caatggttcttggaaggtttttgaagacaat 317  Q
    ||||| |||||||||||||||||||||||||||||||    
T  25727838 gaagatcaatggttcttggaaggtttttgaagacaat 25727802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 183 - 317
Target Start/End: Complemental strand, 25736345 - 25736210
Alignment:
Q  183 aatcatgcaactcaataggtgttttaagtctttt-tgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagggatttaaagagt 281  Q
    ||||||||||||||||||||||||| ||| |||| |  ||| ||||| ||||| ||  |||| ||| | | | |||||||||| |||| || | |||| |    
T  25736345 aatcatgcaactcaataggtgttttgagtgttttgtagtgagaaatcatgtaaatcgacaaatcaatatatcacatgaaggattaagg-atatgaagatt 25736247  T
Q  282 gaaga-caatggttcttggaaggtttttgaagacaat 317  Q
    ||||| |||||||||||||||||||||||||||||||    
T  25736246 gaagatcaatggttcttggaaggtttttgaagacaat 25736210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 183 - 345
Target Start/End: Original strand, 26102144 - 26102306
Alignment:
Q  183 aatcatgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagggatttaaagagtg 282  Q
    ||||||||||||| || |||||||| |||||||||  ||| | ||| || || ||  |||||||||||| | | |||| |||||||| || | |||| ||    
T  26102144 aatcatgcaactccatgggtgttttgagtctttttagtgagatatcgtgcaaatcgacaaaacaagacatcacgtgaatgatcaagg-atatgaagaatg 26102242  T
Q  283 aaga-caatggttcttggaaggtttttgaagacaatataagttgggggaaatttatcccaagtt 345  Q
    |||| ||||| || || |||||||||||||||||||| |||||| || ||||| ||| ||||||    
T  26102243 aagatcaatgatttttagaaggtttttgaagacaatacaagttgaggaaaattcatctcaagtt 26102306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 287 - 377
Target Start/End: Complemental strand, 27461104 - 27461014
Alignment:
Q  287 caatggttcttggaaggtttttgaagacaatataagttgggggaaatttatcccaagttccatgacaattcaatatgaaagaacgctcgaa 377  Q
    |||||||||||  ||||||||||||||||||| ||||| ||| | ||| ||| ||||||||| | || ||||| | |||||||||||||||    
T  27461104 caatggttcttaaaaggtttttgaagacaatacaagtttgggaatattcatcacaagttccaaggcatttcaagacgaaagaacgctcgaa 27461014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 197 - 348
Target Start/End: Original strand, 18795282 - 18795434
Alignment:
Q  197 ataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagggatttaaagagtgaaga-caatggttc 295  Q
    ||||||||||| |||| ||||  ||| ||||| ||||| |||||||||||||||| | ||||| |||||||  ||| | || ||||||||  |||| |||    
T  18795282 ataggtgttttgagtcattttagtgagaaatcgtgtaaatcagcaaaacaagacatcacatgatggatcaa-agatatgaaaagtgaagatgaatgattc 18795380  T
Q  296 ttggaagg-tttttgaagacaatataagttgggggaaatttatcccaagttcca 348  Q
    |  ||||| ||||| ||||||||| ||||||||| ||| | |||| ||||||||    
T  18795381 tatgaaggtttttttaagacaatacaagttggggaaaaatcatccaaagttcca 18795434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 346
Target Start/End: Complemental strand, 34935246 - 34935200
Alignment:
Q  300 aaggtttttgaagacaatataagttgggggaaatttatcccaagttc 346  Q
    |||||||||||||| |||| ||||||||| ||||| |||||||||||    
T  34935246 aaggtttttgaagataatacaagttggggaaaattcatcccaagttc 34935200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 187 - 318
Target Start/End: Complemental strand, 52271268 - 52271137
Alignment:
Q  187 atgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagggatttaaagagtgaaga 286  Q
    ||||||||| |||| |||||| |||||||||  ||| ||||  ||||| || ||||||||| || || | ||||||||| ||| || | |||| |||||     
T  52271268 atgcaactccatagatgttttgagtctttttagtgagaaattatgtaaatcggcaaaacaaaacgccacgtgaaggatcgagg-atatgaagattgaagt 52271170  T
Q  287 -caatggttcttggaaggtttttgaagacaata 318  Q
     ||||||| ||| |||||| |||||||||||||    
T  52271169 tcaatggtacttagaaggtatttgaagacaata 52271137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 183 - 373
Target Start/End: Original strand, 39730534 - 39730724
Alignment:
Q  183 aatcatgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagggatttaaagagtg 282  Q
    |||||||||||||   ||||||||| ||| |||||  ||| ||||| | ||| |||||||||||||||| | |||||||||||||||||| | |||| ||    
T  39730534 aatcatgcaactctgcaggtgttttgagtatttttagtgagaaatcatataaatcagcaaaacaagacatcacatgaaggatcaagggatatgaaga-tg 39730632  T
Q  283 aagac-aatggttcttggaaggtttttgaagacaatataagttgggggaaatttatcccaagttccatgacaattcaatatgaaagaacgct 373  Q
    ||||| |||  ||||| ||||  ||||||||||||||  |||||||| ||||| ||||||||||||| | || ||||| | | |||||||||    
T  39730633 aagactaatatttcttagaagaattttgaagacaataagagttggggaaaattcatcccaagttccaaggcatttcaagacggaagaacgct 39730724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 182 - 359
Target Start/End: Original strand, 31450043 - 31450221
Alignment:
Q  182 taatcatgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagggatttaaagagt 281  Q
    |||| ||||||||  ||||||||||| ||| ||||| |||||||||| ||| |||| |||||  |||||||||  |||| ||||||||||||| |||| |    
T  31450043 taattatgcaactttataggtgttttgagtatttttattgataaatcatgtgattcggcaaagaaagacaccttgtgaaagatcaagggatttcaagaat 31450142  T
Q  282 gaaga-caatggttcttggaaggtttttgaagacaatataagttgggggaaatttatcccaagttccatgacaattcaa 359  Q
    ||| | ||||| | |||  ||||||| ||||||||||| ||||  ||| ||||  ||||||||| ||| |||| |||||    
T  31450143 gaatatcaatgttacttaaaaggtttctgaagacaatacaagtgtgggaaaatgcatcccaagtcccaagacatttcaa 31450221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 239 - 388
Target Start/End: Original strand, 24047525 - 24047675
Alignment:
Q  239 gcaaaacaagacacctcatgaaggatcaagggatttaaagagtgaaga-caatggttct-tggaaggtttttgaagacaatataagttgggggaaattta 336  Q
    ||||||||||||| | ||||||||||||| |||| | |||| |||||| ||||||||||    ||||||| ||||||||||| ||||| ||| ||||| |    
T  24047525 gcaaaacaagacatcccatgaaggatcaa-ggatatgaagaatgaagatcaatggttctcaaaaaggtttgtgaagacaatacaagttagggaaaattca 24047623  T
Q  337 tcccaagttccatgacaattcaatatgaaagaacgctcgaagaaggataaaa 388  Q
     ||||||||||| | || ||||| ||| || |||||||||| ||||| ||||    
T  24047624 acccaagttccaaggcatttcaagatggaaaaacgctcgaaaaaggacaaaa 24047675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 224 - 348
Target Start/End: Original strand, 17152282 - 17152406
Alignment:
Q  224 aaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagggatttaaagagtgaagac-aatggttcttggaaggtttttgaagacaatataag 322  Q
    ||||| ||||| || ||||||||||||| |   ||||||||||||| || | |||| |||| |  |||||||||| ||||||||||||||| |||| |||    
T  17152282 aaatcatgtaaatcggcaaaacaagacatcgtgtgaaggatcaagg-atatgaagaatgaatatgaatggttcttagaaggtttttgaagataatacaag 17152380  T
Q  323 ttgggggaaatttatcccaagttcca 348  Q
    |||||| ||||| |||||| ||||||    
T  17152381 ttggggaaaattcatcccatgttcca 17152406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 318
Target Start/End: Complemental strand, 18236330 - 18236195
Alignment:
Q  183 aatcatgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagggatttaaagagtg 282  Q
    ||||||||||||| ||| || |||| |||||||||  ||| ||||| ||||| || ||||||||||||| | ||||||||||| |   || | |||| ||    
T  18236330 aatcatgcaactccataagtattttgagtctttttagtgagaaatcatgtaactcggcaaaacaagacatcacatgaaggatc-acaaatatgaagattg 18236232  T
Q  283 aa-gacaatggttcttggaaggtttttgaagacaata 318  Q
    || | ||||||||||| ||||||| ||||||||||||    
T  18236231 aaggccaatggttcttagaaggttgttgaagacaata 18236195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 107 - 165
Target Start/End: Original strand, 29769414 - 29769472
Alignment:
Q  107 ccccactgaatttaggatatacatgcatgtgtcttggaattgaacgtggttgaaagtat 165  Q
    ||||||||| ||||||| |||||| ||||||| ||||||||||| || |||||||||||    
T  29769414 ccccactgattttaggagatacatacatgtgttttggaattgaatgtagttgaaagtat 29769472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 290 - 358
Target Start/End: Original strand, 17862604 - 17862672
Alignment:
Q  290 tggttcttggaaggtttttgaagacaatataagttgggggaaatttatcccaagttccatgacaattca 358  Q
    |||||||| |||  |||||||||||| || ||||||||| ||||| ||||||||||||| |||| ||||    
T  17862604 tggttcttagaatttttttgaagacagtacaagttggggaaaattcatcccaagttccaagacatttca 17862672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 258
Target Start/End: Complemental strand, 32703970 - 32703887
Alignment:
Q  175 tcttctctaatcatgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatg 258  Q
    ||||||||||  || |||||  ||| ||||||| | ||||||| |||||||||  |||||||| ||||||||||||| ||||||    
T  32703970 tcttctctaactatacaacttcataagtgttttgaatctttttattgataaattatgtaattccgcaaaacaagacatctcatg 32703887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 199 - 269
Target Start/End: Complemental strand, 15454550 - 15454480
Alignment:
Q  199 aggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagg 269  Q
    ||||||||| ||| |||||  ||| ||||| ||||| | |||||||||||||| | |||||||||||||||    
T  15454550 aggtgttttgagtttttttagtgagaaatcgtgtaaattagcaaaacaagacatcacatgaaggatcaagg 15454480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 267
Target Start/End: Complemental strand, 27417291 - 27417206
Alignment:
Q  183 aatcatgcaactcaataggtgttttaagtctttt-tgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaa 267  Q
    ||||||||||||| ||||||||||||||| |||| |  ||| ||||| ||||| ||  |||| ||||||| | |||||||||||||    
T  27417291 aatcatgcaactccataggtgttttaagtgttttgtagtgagaaatcatgtaaatcgacaaatcaagacatcacatgaaggatcaa 27417206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 325
Target Start/End: Original strand, 31274148 - 31274185
Alignment:
Q  288 aatggttcttggaaggtttttgaagacaatataagttg 325  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  31274148 aatggttcttagaaggtctttgaagacaatataagttg 31274185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 197 - 265
Target Start/End: Complemental strand, 17415176 - 17415108
Alignment:
Q  197 ataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatc 265  Q
    ||||||||||| |||||||||  ||| ||||| ||||| || ||||||||||||| | | |||||||||    
T  17415176 ataggtgttttgagtctttttagtgagaaatcgtgtaaatcggcaaaacaagacatcacgtgaaggatc 17415108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 19541124 - 19541192
Alignment:
Q  183 aatcatgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagaca 251  Q
    ||||||||||||| ||||||||||| ||||||| |  ||| ||||| ||||| || |||||| ||||||    
T  19541124 aatcatgcaactccataggtgttttgagtctttctagtgagaaatcatgtaaatcggcaaaataagaca 19541192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 181 - 393
Target Start/End: Complemental strand, 13530135 - 13529923
Alignment:
Q  181 ctaatcatgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagggatttaaagag 280  Q
    ||||||||||||||| ||| || |||||||  ||||| |||| ||||| ||||| || | ||| |||||||||  || |||||||||||||| | ||||     
T  13530135 ctaatcatgcaactccatatgtattttaagcttttttattgaaaaatcatgtaaatcggtaaagcaagacaccatataaaggatcaagggatatgaagaa 13530036  T
Q  281 tgaaga-caatggttcttggaaggtttttgaagacaatataagttgggggaaatttatcccaagttccatgacaattcaatatgaaagaacgctcgaaga 379  Q
    |||| | ||||| |||||  ||| ||||| ||| ||||| ||||| ||||||||| ||||||| ||||| | || ||||| | ||||||||||| ||| |    
T  13530035 tgaaaatcaatgattcttataagctttttaaaggcaatacaagtt-ggggaaattcatcccaaattccaaggcatttcaagacgaaagaacgcttgaaaa 13529937  T
Q  380 aggataaaaaacta 393  Q
    ||||  ||||||||    
T  13529936 aggaggaaaaacta 13529923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 181 - 393
Target Start/End: Complemental strand, 13619674 - 13619462
Alignment:
Q  181 ctaatcatgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagggatttaaagag 280  Q
    ||||||||||||||| ||| || |||||||  ||||| |||| ||||| ||||| || | ||| |||||||||  || |||||||||||||| | ||||     
T  13619674 ctaatcatgcaactccatatgtattttaagcttttttattgaaaaatcatgtaaatcggtaaagcaagacaccatataaaggatcaagggatatgaagaa 13619575  T
Q  281 tgaaga-caatggttcttggaaggtttttgaagacaatataagttgggggaaatttatcccaagttccatgacaattcaatatgaaagaacgctcgaaga 379  Q
    |||| | ||||| |||||  ||| ||||| ||| ||||| ||||| ||||||||| ||||||| ||||| | || ||||| | ||||||||||| ||| |    
T  13619574 tgaaaatcaatgattcttataagctttttaaaggcaatacaagtt-ggggaaattcatcccaaattccaaggcatttcaagacgaaagaacgcttgaaaa 13619476  T
Q  380 aggataaaaaacta 393  Q
    ||||  ||||||||    
T  13619475 aggaggaaaaacta 13619462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 183 - 377
Target Start/End: Complemental strand, 28260317 - 28260122
Alignment:
Q  183 aatcatgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagggatttaaagagtg 282  Q
    |||||||  |||| ||||||||||| |||||||||  ||| ||||| ||||| |||||||||||||||| | | || |||||||||    | ||| | ||    
T  28260317 aatcatgagactccataggtgttttgagtctttttagtgagaaatcatgtaaatcagcaaaacaagacatcacgtggaggatcaagtatatcaaatattg 28260218  T
Q  283 aaga-caatggttcttggaaggtttttgaagacaatataagttgggggaaatttatcccaagttccatgacaattcaatatgaaagaacgctcgaa 377  Q
    |||| |||| ||||||  || ||||||||||| |||| |||| |||  ||||| ||| ||||||||||  || ||||| ||| |||||||||||||    
T  28260217 aagatcaatagttcttataaagtttttgaagataatacaagtcgggaaaaattcatctcaagttccattgcatttcaagatggaagaacgctcgaa 28260122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 11 - 170
Target Start/End: Complemental strand, 41506017 - 41505859
Alignment:
Q  11 gataatactgattttgaatgaccgtttataattgcttcaaatacatagcaaggtacaattacataatgattgaagtgtgtagaatgtcttcaccaacccc 110  Q
    |||||| |||| ||| |||||  ||||| ||||||||||||| ||||||||  ||||||||||| | || ||| || || | |||| ||| |||| ||||    
T  41506017 gataatgctgactttaaatgaatgtttaaaattgcttcaaattcatagcaaaatacaattacattacgactgatgtctgca-aatgccttaaccatcccc 41505919  T
Q  111 actgaatttaggatatacatgcatgtgtcttggaattgaacgtggttgaaagtataatta 170  Q
    ||||| ||||||| |||||| | ||||| |||||||| || ||||||| ||| |||||||    
T  41505918 actgactttaggagatacatacgtgtgttttggaattaaatgtggttggaagcataatta 41505859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 183 - 318
Target Start/End: Complemental strand, 16052305 - 16052169
Alignment:
Q  183 aatcatgcaactcaataggtgttttaagtctttt-tgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagggatttaaagagt 281  Q
    ||||||||||||||||||||||||| ||| |||| |  ||| ||||| | ||| ||| |||| ||||||| | |||||||||| || |||| | |||| |    
T  16052305 aatcatgcaactcaataggtgttttgagtgttttgtagtgagaaatcatctaaatcaacaaatcaagacatcacatgaaggat-aaaggatatgaagatt 16052207  T
Q  282 gaaga-caatggttcttggaaggtttttgaagacaata 318  Q
     |||| ||||| ||||| ||||||||||||||||||||    
T  16052206 aaagaccaatgattcttagaaggtttttgaagacaata 16052169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 164
Target Start/End: Complemental strand, 16052772 - 16052648
Alignment:
Q  40 aattgcttcaaatacatagcaaggtacaattacataatgattgaagtgtgtagaatgtcttcaccaaccccactgaatttaggatatacatgcatgtgtc 139  Q
    |||||||||||   |||||||||||||||| |||| | ||||||||||||   |||| ||| ||||||||||||   |||||||  ||||| |  || ||    
T  16052772 aattgcttcaatctcatagcaaggtacaatcacatgacgattgaagtgtggcaaatgccttgaccaaccccactagctttaggaggtacatacgcgtatc 16052673  T
Q  140 ttggaattgaacgtggttgaaagta 164  Q
    ||||||||| | |||||||||||||    
T  16052672 ttggaattgtatgtggttgaaagta 16052648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 269
Target Start/End: Original strand, 28074600 - 28074686
Alignment:
Q  183 aatcatgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagg 269  Q
    ||||||||||||| ||||||||||  |||||||||  ||| ||||| ||||| |  ||||||||||||| |  ||||||||||||||    
T  28074600 aatcatgcaactccataggtgtttcgagtctttttagtgagaaatcatgtaaatatgcaaaacaagacatcaaatgaaggatcaagg 28074686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 14424840 - 14424772
Alignment:
Q  183 aatcatgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagaca 251  Q
    ||||||||||||| |||||||||||| || |||||  ||| ||||| ||||| || |||||||||||||    
T  14424840 aatcatgcaactccataggtgttttaggtttttttagtgagaaatcatgtaaatcggcaaaacaagaca 14424772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 264
Target Start/End: Original strand, 30543848 - 30543929
Alignment:
Q  183 aatcatgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggat 264  Q
    |||||||||| |  ||||||||||| |||||||||| ||| ||||| ||||| || | ||||||||| | | ||||||||||    
T  30543848 aatcatgcaattatataggtgttttgagtctttttggtgagaaatcatgtaaatcggtaaaacaagatatcacatgaaggat 30543929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 31436566 - 31436634
Alignment:
Q  183 aatcatgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagaca 251  Q
    ||||||||||||  ||||||||||| | |||||||  ||| ||||| ||||| ||| ||||||||||||    
T  31436566 aatcatgcaactacataggtgttttgaatctttttagtgagaaatcatgtaaatcaacaaaacaagaca 31436634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 183 - 359
Target Start/End: Complemental strand, 9943177 - 9943001
Alignment:
Q  183 aatcatgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagggatttaaagagtg 282  Q
    ||||||||||||| ||||||||||| ||| ||||| |||| ||||| ||||| || | |||||||||||    || ||||| ||| |||| | |||| ||    
T  9943177 aatcatgcaactccataggtgtttttagtatttttattgagaaatcatgtaaatcggaaaaacaagacattaaatcaaggaccaa-ggatatgaagaatg 9943079  T
Q  283 aaga-caatggttcttggaaggtttttgaagacaatataagttgggggaaatttatcccaagttccatgacaattcaa 359  Q
    || | |||||| ||||  ||||||||| |||||||| |||||||||| ||||| ||| ||||||||| |||| |||||    
T  9943078 aaaatcaatggctcttataaggtttttaaagacaatgtaagttggggaaaattcatctcaagttccaagacatttcaa 9943001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 201 - 382
Target Start/End: Original strand, 16439563 - 16439744
Alignment:
Q  201 gtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagggatttaaagagtgaaga-caatggttcttgg 299  Q
    ||||||| |||||||||  ||| ||||| ||||| |||| ||||||||||| |  ||||| ||||| ||||| | |||| |||||| ||||||||||| |    
T  16439563 gtgttttgagtctttttagtgagaaatcatgtaaatcagaaaaacaagacatcagatgaaagatca-gggatatgaagaatgaagatcaatggttcttag 16439661  T
Q  300 aaggtttttgaagacaatataagttgggggaaatttatcccaagttccatgacaattcaatatgaaagaacgctcgaagaagg 382  Q
    || | ||||||||| |||| ||||| ||| ||||| ||| |||| |||| |||| || || | | ||||||||||||| ||||    
T  16439662 aatggttttgaagaaaatacaagttcgggaaaattcatcgcaagatccaagacattttaagacggaagaacgctcgaaaaagg 16439744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 183 - 260
Target Start/End: Original strand, 13835688 - 13835765
Alignment:
Q  183 aatcatgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaa 260  Q
    |||||||||  || ||| ||||||||||||||||| ||||||||||||||||||| ||||| | ||| ||| ||||||    
T  13835688 aatcatgcagttccatatgtgttttaagtctttttattgataaatcttgtaattcggcaaacctagaaaccacatgaa 13835765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 272
Target Start/End: Complemental strand, 13830862 - 13830770
Alignment:
Q  183 aatcatgcaactcaataggtgttttaagtctttttgttgataaa---tcttgtaattcagcaaaacaagacacctcatgaaggatcaagggat 272  Q
    |||||||||  || ||||||| ||| ||||||||||||||||||   ||||||||||  ||||| ||||||||| |||||| || ||||||||    
T  13830862 aatcatgcagttccataggtgatttgagtctttttgttgataaatattcttgtaatttggcaaaccaagacaccacatgaatgaacaagggat 13830770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 8322597 - 8322645
Alignment:
Q  19 tgattttgaatgaccgtttataattgcttcaaatacatagcaaggtaca 67  Q
    |||||||||||| ||||||| ||||| ||||||| ||||||||||||||    
T  8322597 tgattttgaatgtccgtttagaattgtttcaaattcatagcaaggtaca 8322645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 261
Target Start/End: Original strand, 24968883 - 24968925
Alignment:
Q  219 ttgataaatcttgtaattcagcaaaacaagacacctcatgaag 261  Q
    |||| ||||| |||||||||||||| |||||||||||||||||    
T  24968883 ttgaaaaatcatgtaattcagcaaagcaagacacctcatgaag 24968925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 318
Target Start/End: Complemental strand, 26499860 - 26499739
Alignment:
Q  197 ataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagggatttaaagagtgaaga-caatggttc 295  Q
    ||||||||| | ||| |||||  ||| ||||| || || || ||||||||||| ||| | |||| |||| ||| || | |||| |||||| |||||||||    
T  26499860 ataggtgttatgagtgtttttagtgagaaatcatgcaaatcggcaaaacaagataccacgtgaaagatcgagg-atatgaagattgaagatcaatggttc 26499762  T
Q  296 ttggaaggtttttgaagacaata 318  Q
    || ||||||||||||||||||||    
T  26499761 ttagaaggtttttgaagacaata 26499739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 348
Target Start/End: Complemental strand, 32930368 - 32930308
Alignment:
Q  287 caatggttcttggaaggtttttgaagacaatataagttgggggaaatttatcccaagttcca 348  Q
    ||||| |||||||||||||||| ||||||||| ||||| ||| ||||| ||| |||||||||    
T  32930368 caatgattcttggaaggtttttaaagacaatacaagtt-gggaaaattaatcacaagttcca 32930308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 13831309 - 13831253
Alignment:
Q  13 taatactgattttgaatgaccgtttataattgcttcaaatacatagcaaggtacaat 69  Q
    ||||| ||| ||||||||| |||||||||||||||||||| || | | |||||||||    
T  13831309 taatattgactttgaatgaacgtttataattgcttcaaattcaaaaccaggtacaat 13831253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 175 - 353
Target Start/End: Original strand, 21813565 - 21813745
Alignment:
Q  175 tcttctctaatcatgcaactcaataggtgttttaagtctttttg-ttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagggatt 273  Q
    ||||| ||| ||||||||||  |||||| |||| |||||||||  |||||||| | ||||||||||||||||||||||||   |  ||||| |||||||     
T  21813565 tcttccctagtcatgcaactacataggtattttgagtcttttttattgataaaccatgtaattcagcaaaacaagacaccaagttgaggattaagggata 21813664  T
Q  274 taaagagtgaaga-caatggttcttggaaggtttttgaagacaatataagttgggggaaatttatcccaagttccatgaca 353  Q
    | |||| ||| || ||| | | ||| ||||| ||||||||| |||| ||||||||  ||| ||||||||||||||| ||||    
T  21813665 tgaagaatgatgatcaaagttacttagaaggattttgaagataatacaagttgggaaaaaattatcccaagttccaagaca 21813745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 183 - 271
Target Start/End: Complemental strand, 28206163 - 28206076
Alignment:
Q  183 aatcatgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaaggga 271  Q
    ||||||||||||  ||| ||||||| |  |||||| || ||||||| |||||||| ||||||||||||||| |||||||||||||||||    
T  28206163 aatcatgcaacttcataagtgttttgaa-ctttttctttataaatcgtgtaattcggcaaaacaagacaccacatgaaggatcaaggga 28206076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 318
Target Start/End: Complemental strand, 19219181 - 19219103
Alignment:
Q  240 caaaacaagacacctcatgaaggatcaagggatttaaagagtgaaga-caatggttcttggaaggtttttgaagacaata 318  Q
    |||| ||||||| | ||||||||||||||| || | |||| |||||| ||||||||||| ||||||||||||||||||||    
T  19219181 caaaccaagacatcacatgaaggatcaagg-atatgaagattgaagatcaatggttcttagaaggtttttgaagacaata 19219103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 224 - 324
Target Start/End: Complemental strand, 21829119 - 21829019
Alignment:
Q  224 aaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagggatttaaagagtgaaga-caatggttcttggaaggtttttgaagacaatataag 322  Q
    ||||||||||| ||  | |||||||||| | ||||||| ||||||| || | |||| |||||| ||||||||| | |||||| |||||||||||||||||    
T  21829119 aaatcttgtaaatcgtcgaaacaagacatcacatgaagtatcaagg-atatgaagattgaagatcaatggttcatcgaaggtctttgaagacaatataag 21829021  T
Q  323 tt 324  Q
    ||    
T  21829020 tt 21829019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 183 - 331
Target Start/End: Original strand, 25188844 - 25188993
Alignment:
Q  183 aatcatgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagggatttaaagagtg 282  Q
    ||||||||||||| |||  | |||| || | |||||||| |||||| || || |||| ||| ||||||| | || |||||||||||| || | |||| ||    
T  25188844 aatcatgcaactccatatatattttgagccgttttgttgttaaatcatgaaaatcagtaaagcaagacatcacaagaaggatcaaggaatatgaagaatg 25188943  T
Q  283 aaga-caatggttcttggaaggtttttgaagacaatataagttgggggaa 331  Q
    || | |||||||||||   |||||||| ||||||||| ||||||| ||||    
T  25188944 aatatcaatggttcttaagaggttttttaagacaatacaagttggaggaa 25188993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 267
Target Start/End: Complemental strand, 26387872 - 26387788
Alignment:
Q  183 aatcatgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaa 267  Q
    ||||||||||||| |||| |||||| |||||||||  ||| ||||| ||||| ||||| |||||||||| |   |||||||||||    
T  26387872 aatcatgcaactccatagatgttttgagtctttttaatgagaaatcatgtaaatcagctaaacaagacatcaagtgaaggatcaa 26387788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 183 - 317
Target Start/End: Original strand, 26070561 - 26070695
Alignment:
Q  183 aatcatgcaactcaataggtgttttaagtctttttgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagggatttaaagagtg 282  Q
    ||||||||||||| ||| ||||||| |||||||||  ||| ||||| ||||| |  ||||||||||||| | ||||||||||||| |||| | |||| ||    
T  26070561 aatcatgcaactccataagtgttttgagtctttttagtgagaaatcatgtaaattggcaaaacaagacatcacatgaaggatcaa-ggatatgaagattg 26070659  T
Q  283 aaga-caatggttcttggaaggtttttgaagacaat 317  Q
    |||| | ||||||| |  ||||||||||||||||||    
T  26070660 aagatctatggttcgtataaggtttttgaagacaat 26070695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 287 - 382
Target Start/End: Complemental strand, 17695386 - 17695291
Alignment:
Q  287 caatggttcttggaaggtttttgaagacaatataagttgggggaaatttatcccaagttccatgacaattcaatatgaaagaacgctcgaagaagg 382  Q
    |||||||| || |||||||||||||||||||| ||||||||| ||||| |||| |||||||| | || ||||| |   ||||||||||||| ||||    
T  17695386 caatggttattagaaggtttttgaagacaatacaagttggggaaaattcatcctaagttccaaggcatttcaagaccgaagaacgctcgaaaaagg 17695291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 287 - 382
Target Start/End: Original strand, 24130819 - 24130914
Alignment:
Q  287 caatggttcttggaaggtttttgaagacaatataagttgggggaaatttatcccaagttccatgacaattcaatatgaaagaacgctcgaagaagg 382  Q
    |||||| |||| ||||||||||||| |||||| || |||||| ||||| ||||||||||||| | || ||||| |  |||||||||| ||| ||||    
T  24130819 caatggatcttagaaggtttttgaatacaatacaaattggggaaaattcatcccaagttccagggcatttcaagagcaaagaacgctagaaaaagg 24130914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 183 - 318
Target Start/End: Complemental strand, 11274358 - 11274222
Alignment:
Q  183 aatcatgcaactcaataggtgttttaagtctttt-tgttgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagggatttaaagagt 281  Q
    ||||||||||||| ||||||||||| ||| |||| |  | | ||||| ||||  ||  |||| ||||||| | ||||||||||||||| || | |||| |    
T  11274358 aatcatgcaactccataggtgttttgagtgttttgtagtaagaaatcatgtatatcgacaaatcaagacatcacatgaaggatcaagg-atatgaagatt 11274260  T
Q  282 gaagac-aatggttcttggaaggtttttgaagacaata 318  Q
    |||||| |||||||||| |||||| |||||||||||||    
T  11274259 gaagaccaatggttcttagaaggtctttgaagacaata 11274222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 318
Target Start/End: Original strand, 18178247 - 18178324
Alignment:
Q  241 aaaacaagacacctcatgaaggatcaagggatttaaagagtgaaga-caatggttcttggaaggtttttgaagacaata 318  Q
    ||||||||||||| ||||||||||| | |||| | |||| |||||| |||| ||||||||||||| |||||||| ||||    
T  18178247 aaaacaagacaccgcatgaaggatcga-ggatatgaagattgaagaccaattgttcttggaaggtctttgaagataata 18178324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 346
Target Start/End: Complemental strand, 11997922 - 11997757
Alignment:
Q  183 aatcatgcaactcaataggtgttttaagtctttttgt-tgataaatcttgtaattcagcaaaacaagacacctcatgaaggatcaagggatttaaagagt 281  Q
    ||||||||||||  ||||||||||| ||| |||||   ||| ||| | ||||| || ||| | ||||||| || || |||||||||| ||| | |||| |    
T  11997922 aatcatgcaacttcataggtgttttgagttttttttagtgagaaaacatgtaaatcggcagagcaagacatcttattaaggatcaagagatatgaagaat 11997823  T
Q  282 gaaga-caatggttcttggaaggtttttgaagacaatataagttgggggaaatttatcccaagttc 346  Q
    ||||| ||||| || || |||||||||| |||| |||| |||||||   ||||| |||||||||||    
T  11997822 gaagatcaatgatttttagaaggtttttaaagataatacaagttggaaaaaattcatcccaagttc 11997757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 318
Target Start/End: Complemental strand, 26330034 - 26329962
Alignment:
Q  245 caagacacctcatgaaggatcaagggatttaaagagtgaagacaatggttcttggaaggtttttgaagacaata 318  Q
    ||||||| | ||||||||||||| |||| | |||| ||||| ||||||| ||| |||||||||| |||||||||    
T  26330034 caagacatcacatgaaggatcaa-ggatatgaagattgaagtcaatggtccttagaaggttttttaagacaata 26329962  T

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Target: scaffold0011 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 318
Target Start/End: Complemental strand, 228116 - 228079
Alignment:
Q  281 tgaagacaatggttcttggaaggtttttgaagacaata 318  Q
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T  228116 tgaagacaatggttcttagaaggtatttgaagacaata 228079  T

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