View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13943_high_13 (Length: 476)
Name: NF13943_high_13
Description: NF13943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13943_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 5 - 456
Target Start/End: Complemental strand, 2792989 - 2792534
Alignment:
| Q |
5 |
atgaacataaactttctcactaagaagtgcgtatgccaagagataaactcaaataaatcaaactaaacaagcataaatatattcatgattgaaattaaat |
104 |
Q |
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| T |
2792989 |
atgaacataaactttctcactaagaagtgtgtatgccaatagataaactcaaataaatcaaactaaacaagcataaatatattcatgattgaaattaaat |
2792890 |
T |
|
| Q |
105 |
tacctccatggcaagagcattgaagagaagcagtgtaacaagaagctgatgtgatttttcaaccaaaggaattatgattgctgcatgcataataaggtga |
204 |
Q |
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| T |
2792889 |
tacctccatggtaagagcattgaagagaagcagtgtaacaagaagctgatgtgatttttcaaccaaaggaattatgatttctgcatgcataataaggtga |
2792790 |
T |
|
| Q |
205 |
attag---gttttcaatcataacaacaataacaaataatattacttaaactatgtgtt-aaaggaacagttaccagcttgnnnnnnnncaaaagaagaac |
300 |
Q |
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| T |
2792789 |
attgttgagttttcaatggtaacaacaataacaaacaatattacttaaactatgtgttaaaaagaatagttaccagcttgttttttctcagaagaagaac |
2792690 |
T |
|
| Q |
301 |
cacttagtttgagaatttctaagttaatgattttttgagacaagaaaccaatggtgagaccggacatgagtccggaaaatagaacaataaaacagcagaa |
400 |
Q |
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| T |
2792689 |
cacttagtttgagaatttctaagttaatgattttttgagacaagaaaccaatggtgagaccggacatgagtccggaaaatagaacaataaaacagcagaa |
2792590 |
T |
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| Q |
401 |
gacagcgtaagcgatccatgttgccgacccaaaaggcatgctttcgtgggcgagaa |
456 |
Q |
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| T |
2792589 |
gacagcgtaagcgatccatgttgccgacccaaaaggtatgctttcgtgggcgagaa |
2792534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 337 - 455
Target Start/End: Complemental strand, 16387912 - 16387794
Alignment:
| Q |
337 |
gagacaagaaaccaatggtgagaccggacatgagtccggaaaatagaacaataaaacagcagaagacagcgtaagcgatccatgttgccgacccaaaagg |
436 |
Q |
| |
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|||||| || ||||| |||||||||||||||| ||||| ||| ||||||| ||||||||| | | |||||||| ||||||||||| || |||||||| |
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| T |
16387912 |
gagacatgagaccaagtgtgagaccggacatgactccggcaaagagaacaagaaaacagcatattccggcgtaagcaatccatgttgcagaaccaaaagg |
16387813 |
T |
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| Q |
437 |
catgctttcgtgggcgaga |
455 |
Q |
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| T |
16387812 |
tatgccttcgttggcgaga |
16387794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 190
Target Start/End: Complemental strand, 16388451 - 16388353
Alignment:
| Q |
92 |
attgaaattaaattacctccatggcaagagcattgaagagaagcagtgtaacaagaagctgatgtgatttttcaaccaaaggaattatgattgctgcat |
190 |
Q |
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||||||||| |||||||||||| | || |||||| ||||||||| |||||||||||||| ||| ||||| ||||| |||| ||||||||||||| |
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| T |
16388451 |
attgaaattgaattacctccatagaaacagcattacagagaagcaaagtaacaagaagctggtgttgttttttaaccacgggaagaatgattgctgcat |
16388353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 89 - 190
Target Start/End: Complemental strand, 48667649 - 48667548
Alignment:
| Q |
89 |
atgattgaaattaaattacctccatggcaagagcattgaagagaagcagtgtaacaagaagctgatgtgatttttcaaccaaaggaattatgattgctgc |
188 |
Q |
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|||||||||||| |||||||||||| |||| ||||| |||||||||| ||||||||||| |||||| ||||| ||| | |||| |||||| ||||| |
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| T |
48667649 |
atgattgaaattgaattacctccatagcaacggcattacagagaagcagagtaacaagaagttgatgttgttttttaacgacgggaagtatgatcgctgc |
48667550 |
T |
|
| Q |
189 |
at |
190 |
Q |
| |
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|| |
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|
| T |
48667549 |
at |
48667548 |
T |
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