View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13943_high_14 (Length: 475)
Name: NF13943_high_14
Description: NF13943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13943_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 29 - 460
Target Start/End: Complemental strand, 27833019 - 27832608
Alignment:
| Q |
29 |
acgcataagcctaaggagacagatgcaaaaaattatcaattccaattattatcggcaacgtacagcactgaaatcactatagtataagcaaatcagagac |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27833019 |
acgcataagcctaaggagacagatgcaaaaaattatcaattccaattattatcggcaacgtacagcactgaaatcactatagtataagcaaatcagagac |
27832920 |
T |
|
| Q |
129 |
tctaaattgttgcctattctctcaatcaaaacagaaagcatcaataattacatgcaataaccgaagaagcctcggattcaagaattattgtatcgatcaa |
228 |
Q |
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|||||||||||||||||| | |||||||||||||||| | ||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
27832919 |
tctaaattgttgcctattatttcaatcaaaacagaaa---tgaat-----------------gaagaagcctcagattcaagaattattgtatcgatcaa |
27832840 |
T |
|
| Q |
229 |
agaataatctctcagatggtacggacaatattcatacatcacaggcaaataattaataatgatatgataaaaatataggtcgttaccaggccctcaaatc |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27832839 |
agaataatctctcagatggtacggacaatattcatacatcacaggcaaataattaataatgatatgataaaaatataggtcgttaccaggccctcaaatc |
27832740 |
T |
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| Q |
329 |
aagtcaaagatcaaagagagcagacatgcggaccttaagaaattcaattttcgtgcacacagcaatgcttccttcattgttttcatccagagcatcggct |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27832739 |
aagtcaaagatcaaagagagcagacatgcggaccttaagaaattcaattttcgtgcacacagcaatgcttccttcattgttttcatccagagcatcggct |
27832640 |
T |
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| Q |
429 |
tattgtgcacgaattcgtttataattcgaaaa |
460 |
Q |
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| T |
27832639 |
tattgtgcacgaattcactaataattcgaaaa |
27832608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 297 - 449
Target Start/End: Complemental strand, 27827839 - 27827691
Alignment:
| Q |
297 |
aaaaatataggtcgttaccaggccctcaaatcaagtcaaagatcaaagagagcagacatgcggaccttaagaaattcaattttcgtgcacacagcaatgc |
396 |
Q |
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|||||| ||||||||||||||||||| ||||||| |||||||||| |||| |||||||||||||||| ||||| |||||||||||||||||||||| |
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| T |
27827839 |
aaaaatgtaggtcgttaccaggccctaaaatcaaatcaaagatcatagagggcagacatgcggacct---aaaatttaattttcgtgcacacagcaatga |
27827743 |
T |
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| Q |
397 |
ttccttcattgttttcatccagagcatcggcttattgtgcacgaattcgttta |
449 |
Q |
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| T |
27827742 |
ttccttcatt-cttaattccagaccatcggcttattgtgcacgaatttgttta |
27827691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 31 - 145
Target Start/End: Complemental strand, 27845582 - 27845468
Alignment:
| Q |
31 |
gcataagcctaaggagacagatgcaaaaaattatcaattccaattattatcggcaacgtacagcactgaaatcactatagtataagcaaatcagagactc |
130 |
Q |
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|||||||||| | |||||| |||||| || ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
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| T |
27845582 |
gcataagccttggaagacaggtgcaaataaaattcaattcaaattattatcggcaacgtacaacactgaaatcactatagtataagcaaagcagagactt |
27845483 |
T |
|
| Q |
131 |
taaattgttgcctat |
145 |
Q |
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||||||||||||||| |
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| T |
27845482 |
taaattgttgcctat |
27845468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 375 - 460
Target Start/End: Complemental strand, 27845306 - 27845222
Alignment:
| Q |
375 |
attttcgtgcacacagcaatgcttccttcattgttttcatccagagcatcggcttattgtgcacgaattcgtttataattcgaaaa |
460 |
Q |
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| T |
27845306 |
attttcgtgcacacaacaatgcttccttcattgtttt-attcagagcatcgacttattgtgcacatattcatttataattcaaaaa |
27845222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 72 - 143
Target Start/End: Complemental strand, 27291461 - 27291390
Alignment:
| Q |
72 |
aattattatcggcaacgtacagcactgaaatcactatagtataagcaaatcagagactctaaattgttgcct |
143 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||| |
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| T |
27291461 |
aattgttatcggcaacgtacagcactgaaatcactattgatcgagcgaatcagagactctaaattgttgcct |
27291390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 72 - 143
Target Start/End: Complemental strand, 27292052 - 27291981
Alignment:
| Q |
72 |
aattattatcggcaacgtacagcactgaaatcactatagtataagcaaatcagagactctaaattgttgcct |
143 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
27292052 |
aattattattggcaacgtacagcactgaaatcactatcaaataaatgaatcagagactctaaattgttgcct |
27291981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 76 - 143
Target Start/End: Complemental strand, 27298825 - 27298758
Alignment:
| Q |
76 |
attatcggcaacgtacagcactgaaatcactatagtataagcaaatcagagactctaaattgttgcct |
143 |
Q |
| |
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||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
27298825 |
attattggcaacgtacagcactgaaatcactattaaataagtgaatcagagactctaaattgttgcct |
27298758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 72 - 143
Target Start/End: Complemental strand, 27304484 - 27304413
Alignment:
| Q |
72 |
aattattatcggcaacgtacagcactgaaatcactatagtataagcaaatcagagactctaaattgttgcct |
143 |
Q |
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||||||||| |||||||||||||||||||||||| || ||||| ||||||||||||||| ||||||||| |
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| T |
27304484 |
aattattattggcaacgtacagcactgaaatcaccatcaaataagtgaatcagagactctaatttgttgcct |
27304413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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