View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13943_high_16 (Length: 465)
Name: NF13943_high_16
Description: NF13943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13943_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 117 - 454
Target Start/End: Complemental strand, 33816981 - 33816644
Alignment:
| Q |
117 |
tatgtgattaatcctcaagctgatagcagaccatctaattttccttttattaagacttagttatatcatgaattgaaaactccaattcttttcctgaaat |
216 |
Q |
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| T |
33816981 |
tatgtgattaatcctcaagctgatagcagaccatctaatttttcttttattaagacttagttatatcatgaattgaaaactccaattcttttcctgaaat |
33816882 |
T |
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| Q |
217 |
caagttcaacttctccaatatcatgatcatgttggtcgaaacctcttatttgggaaagtataagtgtaacatgtaattgttcatgtattcaattagaaga |
316 |
Q |
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| T |
33816881 |
caagttcaacttctccaatatcatgatcatcttggtcgaaacctcttatttgggaaagtataagtgtaacatgtaattgttcatgtattcaattagaagt |
33816782 |
T |
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| Q |
317 |
cnnnnnnnnnncgctctagttggtggtttaatcaatcaaggtgtggcgggtttgttgccttaattccaattaattgtattaaggtgcaattaatattcta |
416 |
Q |
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| T |
33816781 |
tttttttctttctctctagttggtggtttaatcaatcaaggtgtggcgggtttgttgccttaattccaattaattgtattaaggtgcaattaatattcta |
33816682 |
T |
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| Q |
417 |
ttgtgtcctataagtatattgaaaatattatggaccta |
454 |
Q |
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| T |
33816681 |
ttgtgtcttataagtatattgaaaatattatggaccta |
33816644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 33817036 - 33816988
Alignment:
| Q |
17 |
attgactttaggaagtcttcacaatgaataagacaacatacagacctag |
65 |
Q |
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| T |
33817036 |
attgactttaggaagtcttcacaatgaataagacaacatacagacctag |
33816988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 24 - 91
Target Start/End: Complemental strand, 29873979 - 29873913
Alignment:
| Q |
24 |
ttaggaagtcttcacaatgaataagacaacatacagacctagatagtcacaacataactcagaaagaa |
91 |
Q |
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| T |
29873979 |
ttaggaagtcttcacaatgaataagacaacat-cagacctagataatcacgccataacttagaaagaa |
29873913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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