View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13943_high_20 (Length: 423)
Name: NF13943_high_20
Description: NF13943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13943_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 371; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Original strand, 39840646 - 39841059
Alignment:
| Q |
1 |
ctggttattgatttcataaaggttattcaaatcaggatcaaagggaccagcacttggtaatttattttaatcttatcaccagattgtttgtcattttttc |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39840646 |
ctggttattgatttcataaaggttattcaaatcgggatcaaagggaccagcacttggtaatttattttaatcttatcaccagattgtttgtcattttttc |
39840745 |
T |
|
| Q |
101 |
aatatttttctttgcgtctcaaattatttcatagctagcaatgctttccacccccctttaccataccatatgtttagcctcattttttcgtagcttgtca |
200 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39840746 |
aatatttttctttgcatctcaaattatttcacagctagcaatgctttccatccccctttaccataccatatgtttagcctcattttttcgtagcttgtca |
39840845 |
T |
|
| Q |
201 |
tttggggtttttaattttaccacgtttagcgtgcgtcctgtcctgaatatgttcatgtttgacattttgatatttcagaacagcatgcctgtgtcatgcc |
300 |
Q |
| |
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|||||||||||||| ||| ||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
39840846 |
tttggggtttttaa-tttgccatgtttagcgtgcgtcctgttctgaatatgttcatgcttgacattttgatatttcagaacagcatgcctgtgtcatgcc |
39840944 |
T |
|
| Q |
301 |
cggggtcccactaatttgcttacattgtaattttagctttgctttgcttttttaaaaacattatcagcacattcttcttattctttttgtaaactcgttc |
400 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39840945 |
ccgggtcccactaatttgcttacattgtaattttagctttgctttgcttttttaaaaacattatcagcacattcttcttattctttttgtaaactcgttc |
39841044 |
T |
|
| Q |
401 |
tcaaatttcccctgt |
415 |
Q |
| |
|
||||||||||||||| |
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|
| T |
39841045 |
tcaaatttcccctgt |
39841059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 350
Target Start/End: Original strand, 35162406 - 35162734
Alignment:
| Q |
18 |
aaaggttattcaaatcaggatcaaagggaccagcacttggtaatttattttaatcttatcaccagattgtttgtcattttttcaatatttttctttgcgt |
117 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||| | |
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|
| T |
35162406 |
aaaggttattagaatcaggatcaaagggaccagtacttggtaatttattttaatcttatcaccagattgtttctcattttttcaaaatgtttctttgcat |
35162505 |
T |
|
| Q |
118 |
ctcaaattatttcatagctagcaatgctttccacccccctttaccataccatatgtttagcctcattttttcgtagcttgtcatttggggtttttaattt |
217 |
Q |
| |
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|||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
35162506 |
ctcaaattatttcatacatagcaatgctttccactcccctttaccataccatatgtttagcctcattttttcgtagcttgtcatttggggtttttaa-tt |
35162604 |
T |
|
| Q |
218 |
taccacgtttagcgtgcgtcctgtcctgaatatgttcatgtttgacattttgatatttcagaacagcatgcctgtgtcatgcccggggtcccactaattt |
317 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
35162605 |
tgccacgtttagcgtgcgtcctgtcctgaatatgttcatgcttgacattttgatatttcagaacagcatgcctgtgtcatgccc---ctcccactaattt |
35162701 |
T |
|
| Q |
318 |
gcttacattgtaattttagctttgctttgcttt |
350 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
35162702 |
gcttacattgtaattttagctttgctttgcttt |
35162734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 352
Target Start/End: Complemental strand, 44797708 - 44797374
Alignment:
| Q |
18 |
aaaggttattcaaatcaggatcaaagggaccagcacttggtaatttattttaatcttatcaccagattgtttgtcattttttcaatatttttctttgcgt |
117 |
Q |
| |
|
|||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| | |
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| T |
44797708 |
aaaggttattataatcaggatggaagggaccagtacttggtaatttattttaatcttatcaccagattgtttctcattttttcaatatgtttctttgcat |
44797609 |
T |
|
| Q |
118 |
ctcaaattatttcatagctagcaatgctttccacc----cccctttaccataccatatgtttagcctcattttttcgtagcttgtcatttggggttttta |
213 |
Q |
| |
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|||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44797608 |
ctcaaattatttgatacatagcaatgctttccacccccccccctttaccataccatatgtttagcctcattttttcgtagcttgtcatttggggttttta |
44797509 |
T |
|
| Q |
214 |
attttaccacgtttagcgtgcgtcctgtcctgaatatgttcatgtttgacattttgatatttcagaacagcatgcctgtgtcatgcccggggtcccacta |
313 |
Q |
| |
|
| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
44797508 |
a-tttgccacgtttagcgtgcgtcctgtcctgaatatgttcatgcttgacattttgatatttcagaacagcatgcctgtgtcttgccc---ctcccacta |
44797413 |
T |
|
| Q |
314 |
atttgcttacattgtaattttagctttgctttgcttttt |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
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| T |
44797412 |
atttgcttacattgtaattttagctttgctttgcttttt |
44797374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 30 - 352
Target Start/End: Original strand, 39845642 - 39845967
Alignment:
| Q |
30 |
aatcaggatcaaagggaccagcacttggtaatttattttaatcttatcaccagattgtttgtcattttttcaatatttttctttgcgtctcaaattattt |
129 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||| |
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| T |
39845642 |
aatcaggatggaagggaccagtacttggtaatttattttaatcttatcaccagattgtttgtcattttttcaatatgtttctttgcatctgaaattattt |
39845741 |
T |
|
| Q |
130 |
catagct---agcaatgctttccacccccctttaccataccatatgtttagcctcattttttcgtagcttgtcatttggggtttttaattttaccacgtt |
226 |
Q |
| |
|
|||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| | ||| ||||||| |
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|
| T |
39845742 |
catacatagcagcaatgctttccacccccctttaccataccacatgtttagcctcattttttcgcagcttgtcatttggggtttt--aatttgccacgtt |
39845839 |
T |
|
| Q |
227 |
tagcgtgcgtcctgtcctgaatatgttcatgtttgacattttgatatttcagaacagcatgcctgtgtcatgcccgg--ggtcccactaatttgcttaca |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||| ||||| |
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|
| T |
39845840 |
tagcgtgcgtcctgtcctgaatatgttcatgcttgacattttgatatttctgaacagcatgcctgtgtcatgccctgcccctcccactaatttgattaca |
39845939 |
T |
|
| Q |
325 |
ttgtaattttagctttgctttgcttttt |
352 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
39845940 |
ttgtaattttagctttgctttgcttttt |
39845967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 351 - 415
Target Start/End: Original strand, 35162824 - 35162888
Alignment:
| Q |
351 |
tttaaaaacattatcagcacattcttcttattctttttgtaaactcgttctcaaatttcccctgt |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
35162824 |
tttaaaaacattatcagcacattcttcttattctttttgtaaactcgttttcaaatttcccctgt |
35162888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 351 - 413
Target Start/End: Original strand, 39846045 - 39846107
Alignment:
| Q |
351 |
tttaaaaacattatcagcacattcttcttattctttttgtaaactcgttctcaaatttcccct |
413 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
39846045 |
tttaataacattatcagcacattcttcttattctttttgtaaattcgttctcaaatttcccct |
39846107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 351 - 415
Target Start/End: Complemental strand, 44797296 - 44797232
Alignment:
| Q |
351 |
tttaaaaacattatcagcacattcttcttattctttttgtaaactcgttctcaaatttcccctgt |
415 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
44797296 |
tttaaaaacattatcagcacattcttcttgttctttttgtaaacttgttttcaaatttcccctgt |
44797232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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