View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13943_high_22 (Length: 369)
Name: NF13943_high_22
Description: NF13943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13943_high_22 |
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Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 6455941 - 6455586
Alignment:
| Q |
1 |
ttttggacatctgatacaagggcagttcaagccttccaaaagtttggaagcaaactatctgaaattgaagggaaaatccacgggaggaacaaagattcta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6455941 |
ttttggacatctgatacaagggcagttcaagccttccaaaagtttggaagcaaactatctgaaattgaagggaaaatccacgggaggaacaaagattcta |
6455842 |
T |
|
| Q |
101 |
gtttgaaaaaccgcactggaccagttgaattgccttacactttgctccttcgttcaagtgaagaaggtttaacttttagaggaattcccaacagtatctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6455841 |
gtttgaaaaaccgcactggaccagttgaattgccctacactttgctccttcgttcaagtgaagaaggtttaacttttagaggaattcccaacagtatctc |
6455742 |
T |
|
| Q |
201 |
tatttagnnnnnnnnnnnnnnngtgtgtggattatttcttatctattgtgcattttcgctttccaataacatcgatgtacatcgatgtgaatatgatgat |
300 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6455741 |
tatttagaaagaaaaaaaaagtctgtgtggattatttcttatctattgtgcattttcgctttccaataacatcgatgtacatcgatgtgaatatgatgat |
6455642 |
T |
|
| Q |
301 |
tgtc----tataattgttgtttctatgtgtgtactactattgtatttgggtgtttt |
352 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6455641 |
tgtctatttataattgttgtttctatgtgtgtactactattgtatttgggtgtttt |
6455586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 6449474 - 6449268
Alignment:
| Q |
1 |
ttttggacatctgatacaagggcagttcaagccttccaaaagtttggaagcaaactatctgaaattgaagggaaaatccacgggaggaacaaagattcta |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||| || |||| |
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| T |
6449474 |
ttttggacatctgatacaagggcagttcaagctttccaaaagtttggaagcaaactaactgaaattgaagggaaaatcactaagaggaacaatgagtcta |
6449375 |
T |
|
| Q |
101 |
gtttgaaaaaccgcactggaccagttgaattgccttacactttgctccttcgttcaagtgaagaaggtttaacttttagaggaattcccaacagtatctc |
200 |
Q |
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|||||| ||||||||| |||||||| ||||||| ||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
6449374 |
gtttgagaaaccgcaccggaccagtgcaattgccctacactttgctacttcgttcaagtgaagaaggtttaacattcagaggaattcccaacagtatctc |
6449275 |
T |
|
| Q |
201 |
tatttag |
207 |
Q |
| |
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||||||| |
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| T |
6449274 |
tatttag |
6449268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 153 - 200
Target Start/End: Complemental strand, 6261780 - 6261733
Alignment:
| Q |
153 |
ttcaagtgaagaaggtttaacttttagaggaattcccaacagtatctc |
200 |
Q |
| |
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||||||||| ||||| | ||||||||||||||||||||||||||||| |
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|
| T |
6261780 |
ttcaagtgaggaaggacttacttttagaggaattcccaacagtatctc |
6261733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 9606542 - 9606746
Alignment:
| Q |
1 |
ttttggacatctgatacaagggcagttcaagccttccaaaagtttggaagcaaactatctgaaattgaagggaaaatccacgggaggaacaaagattcta |
100 |
Q |
| |
|
||||||||||| ||| |||| ||| | ||||| || |||||||||||||| || || | |||||||||| |||||| | || ||||| ||||| |
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| T |
9606542 |
ttttggacatccgattcaagagcattgcaagcatttcaaaagtttggaagtaagctggccaaaattgaaggaaaaatcacagaaagaaacaatgattccg |
9606641 |
T |
|
| Q |
101 |
gtttgaaaaaccgcactggaccagttgaattgccttacactttgctccttcgttcaagtgaagaaggtttaacttttagaggaattcccaacagtatctc |
200 |
Q |
| |
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||||||||| || ||||| || || ||||||| || |||||||| | |||||| |||||||| || ||||| |||||||||||||||||||||||||| |
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| T |
9606642 |
atttgaaaaatcgaactgggccggtgcaattgccctatactttgcttcatcgttctagtgaagatggattaacctttagaggaattcccaacagtatctc |
9606741 |
T |
|
| Q |
201 |
tattt |
205 |
Q |
| |
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||||| |
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|
| T |
9606742 |
tattt |
9606746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 203
Target Start/End: Complemental strand, 42691823 - 42691751
Alignment:
| Q |
131 |
tgccttacactttgctccttcgttcaagtgaagaaggtttaacttttagaggaattcccaacagtatctctat |
203 |
Q |
| |
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||||||| |||||||| | || ||| ||||| ||||| ||||||||||||||||||| || ||||||||||| |
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| T |
42691823 |
tgccttatactttgcttcatccttctagtgaggaaggactaacttttagaggaattcctaatagtatctctat |
42691751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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