View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13943_high_45 (Length: 214)
Name: NF13943_high_45
Description: NF13943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13943_high_45 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 3 - 198
Target Start/End: Original strand, 29711760 - 29711956
Alignment:
| Q |
3 |
catattaacctacgaatgcagccacccaagagtacatgtagatcacgaaaatggtgaaggagaatacttcaagacctcgttcttcttattcgtt-catct |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29711760 |
catattaacctacgaatgcagccacccaagagtacatgtagatcacgaaaatggtgaaggagaatacttcaagacctcgttcttcttattcgtttcatct |
29711859 |
T |
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| Q |
102 |
tcttagcttgaccactgtcaccatcaggaattgagagcagagattctgtatacataaccactagggatccatattcattgtcacagtaggagtgatg |
198 |
Q |
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| T |
29711860 |
tcttagcttgaccactgtcaccatcaggaattgaaagcagagattctgtatacataaccactagggatccatattcattgtcacagtaggactgatg |
29711956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 42 - 199
Target Start/End: Complemental strand, 29696940 - 29696781
Alignment:
| Q |
42 |
agatcacgaaaatggtgaaggagaatacttcaagacctcgttcttctta-ttcgttcatcttcttag-cttgaccactgtcaccatcaggaattgagagc |
139 |
Q |
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|||||| ||||||||||||| |||||||||||| ||||| |||||||| ||| ||||||||||| ||||||||||||||||| |||||||||| ||| |
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| T |
29696940 |
agatcatgaaaatggtgaagaagaatacttcaaaacctcattcttcttggttctgtcatcttcttaaacttgaccactgtcaccaccaggaattgaaagc |
29696841 |
T |
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| Q |
140 |
agagattctgtatacataaccactagggatccatattcattgtcacagtaggagtgatgt |
199 |
Q |
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| T |
29696840 |
agagattctgtatacataaccactggggatacatattgactgtcacagtaggagtgatgt |
29696781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 42 - 198
Target Start/End: Complemental strand, 29688827 - 29688672
Alignment:
| Q |
42 |
agatcacgaaaatggtgaaggagaatacttcaagacctcgttcttcttattcgttcatcttctta-gcttgaccactgtcaccatcaggaattgagagca |
140 |
Q |
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| T |
29688827 |
agatcatgaaaatggtgaaggggaatacttgaaaacctcattcttgtc-tgcgt-catcttcttaagcctgatcactgtcaccaccaggaagtgaaagca |
29688730 |
T |
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| Q |
141 |
gagattctgtatacataaccactagggatccatattcattgtcacagtaggagtgatg |
198 |
Q |
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| T |
29688729 |
gagattctgtatacataaccactagggatccatattcatggtccgagtaggagtgatg |
29688672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 89
Target Start/End: Complemental strand, 9120465 - 9120420
Alignment:
| Q |
44 |
atcacgaaaatggtgaaggagaatacttcaagacctcgttcttctt |
89 |
Q |
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|||| |||||||||||||||||||| ||||| ||||| |||||||| |
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| T |
9120465 |
atcaagaaaatggtgaaggagaatatttcaaaacctcattcttctt |
9120420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 29688882 - 29688846
Alignment:
| Q |
3 |
catattaacctacgaatgcagccacccaagagtacat |
39 |
Q |
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| T |
29688882 |
catattaccctacgaatgcagccactcaagagtacat |
29688846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 89
Target Start/End: Complemental strand, 48871259 - 48871214
Alignment:
| Q |
44 |
atcacgaaaatggtgaaggagaatacttcaagacctcgttcttctt |
89 |
Q |
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|||| |||||||||||||||||||| ||||| ||||| |||||||| |
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| T |
48871259 |
atcaagaaaatggtgaaggagaataattcaaaacctcattcttctt |
48871214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 89
Target Start/End: Complemental strand, 48876563 - 48876518
Alignment:
| Q |
44 |
atcacgaaaatggtgaaggagaatacttcaagacctcgttcttctt |
89 |
Q |
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|||| |||||||||||||||||||| ||||| ||||| |||||||| |
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| T |
48876563 |
atcaagaaaatggtgaaggagaataattcaaaacctcattcttctt |
48876518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 89
Target Start/End: Complemental strand, 48886945 - 48886900
Alignment:
| Q |
44 |
atcacgaaaatggtgaaggagaatacttcaagacctcgttcttctt |
89 |
Q |
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|||| |||||||||||||||||||| ||||| ||||| |||||||| |
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| T |
48886945 |
atcaagaaaatggtgaaggagaataattcaaaacctcattcttctt |
48886900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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