View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13943_high_46 (Length: 211)

Name: NF13943_high_46

Description: NF13943

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF13943_high_46

[»] chr7 (1 HSPs)

[»] chr3 (1 HSPs)

Target: chr7 (Bit Score: 163; Significance: 3e-87; HSPs: 1)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 163; E-Value: 3e-87

Query Start/End: Original strand, 1 - 192

Target Start/End: Complemental strand, 2700847 - 2700656

Alignment:

Q	1	ccttattaactttagttgttttgtgagtatgttttacaaaacatagatgtttttcaataaaatttaaattagannnnnnngttgttattgttgttgttat	100	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	2700847	ccttattaactttagttgttttgtgagtatgttttacaaaacatagatgtttttcaataaaatttaaattagatttttttgttgttattgttgttgttat	2700748	T

Q	101	aattaattggcaattattagatttgtttaacctaaaaccatagttttgtgatgctaattatgttggtccttaattagtaaaagatatataat	192	Q
		\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	2700747	atttaattggcaattattagatttgtttagcctaaaaccatagttttgtgatgctaattatgttggtccttaattagtaaaagatatataat	2700656	T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 35; E-Value: 0.00000000007

Query Start/End: Original strand, 101 - 194

Target Start/End: Complemental strand, 10843325 - 10843231

Alignment:

Q	101	aattaattggcaattattagatttgtttaacctaaaaccatagttttgtgatgctaattatgttggtcc-ttaattagtaaaagatatataatgt	194	Q
		\|\|\|\|\|\|\|\|\| \|\| \|\|\| \| \|\|\|\| \| \|\|\| \|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	10843325	aattaattgacagttaatggattagattagcctaaaaccagagatttgtgatgataattatgttggtccacaaattaataaaagatatataatgt	10843231	T

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