View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13943_high_5 (Length: 612)
Name: NF13943_high_5
Description: NF13943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13943_high_5 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 515; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 1 - 612
Target Start/End: Original strand, 6138537 - 6139148
Alignment:
| Q |
1 |
ctgctcaaggttcacagggtgatgaaggttctagtagaagacgcactcttccttcnnnnnnncatactcatcaagacaacgtcaacatgtcgtcatcatc |
100 |
Q |
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| T |
6138537 |
ctgctcaaggttcacagggtgatgaaggttctagtagaagacgcactcttccttctttttttcatactcatcaagacaacgtcaacatgtcgtcatcatc |
6138636 |
T |
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| Q |
101 |
ttcatcaacatcttggagggactttgacaacacgatgaacgacgctgctcttgcacgtgaaggaccaagtacttatggtactacttctgctacttggtct |
200 |
Q |
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| T |
6138637 |
ttcatcaacatcttggagggactttgacaacacgatgaacgacgctgctcttgcacgtgcaggaccaagtacttatggtactacttctgctacttggtct |
6138736 |
T |
|
| Q |
201 |
ccactttatagtcctcctcgtggtacaataggtctttttgaagatgatcgtccaattccatatcataatgcacctcattctgattttctcactgagcctc |
300 |
Q |
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| T |
6138737 |
ccactttatagtcctcctcgtggtacaataggtctttttgaagatgatcgtccaattccatatcataatgcacctcattctgattttctcactgagcctc |
6138836 |
T |
|
| Q |
301 |
tcgatattcctagcatgttacgtcgtcaagagcatcctaggacaaacttcaatataggaagacacgatccttctcctgcttctagatccgcctatgcatc |
400 |
Q |
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| T |
6138837 |
tcgatattcctagcatgttatgtcgtcaagagcatcctaggacaaacttcaacataggaagacacgatccttctcctgcttctagatccgcctatgcatc |
6138936 |
T |
|
| Q |
401 |
atttctatatccctctacagcaacaggtgcatcaagaggttcttcttctcgaagcacaagccggaggcagaataacaacaataacgtggacatctttgat |
500 |
Q |
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| T |
6138937 |
atttctatatccctctacaacaacaggtggagcaagaggttcttcttctcgaagcacaagccggaggcagaacaacaacaataacgtggacatctttgat |
6139036 |
T |
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| Q |
501 |
cttattcatgaacaacgaatggatgaagcagatgctgaaaacatgataactgttcaacacctggcaaggttatggctgggaggccgtgtaaagcgattga |
600 |
Q |
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| T |
6139037 |
cttattcatgaacaacgaatggatgaagcatatgctgaaaatatgataaatgttcaacaacatgcaaggttattgccaggaggccgtgtaaatcgattta |
6139136 |
T |
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| Q |
601 |
gtgatccaacta |
612 |
Q |
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| T |
6139137 |
gtgttccaacta |
6139148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 460
Target Start/End: Complemental strand, 33731335 - 33731270
Alignment:
| Q |
395 |
tgcatcatttctatatccctctacagcaacaggtgcatcaagaggttcttcttctcgaagcacaag |
460 |
Q |
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| T |
33731335 |
tgcatcatttctatatccctctgcagcaacaagagaagcaacaagttcttcttctcaaggcacaag |
33731270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 395 - 460
Target Start/End: Complemental strand, 33802714 - 33802649
Alignment:
| Q |
395 |
tgcatcatttctatatccctctacagcaacaggtgcatcaagaggttcttcttctcgaagcacaag |
460 |
Q |
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|||||||||||||||||||||| |||||||| | | | ||| | |||||||||||| | ||||||| |
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| T |
33802714 |
tgcatcatttctatatccctctgcagcaacaagagaagcaacatgttcttcttctcaaggcacaag |
33802649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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