View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13943_high_9 (Length: 515)
Name: NF13943_high_9
Description: NF13943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13943_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 7 - 499
Target Start/End: Complemental strand, 48324575 - 48324084
Alignment:
| Q |
7 |
atgaacgatgatgaattgtttcgaagaacttcgttgatttctatgattcacgaacctccgttcaatcaaacaccaaagattgcctttatgtttttgacaa |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48324575 |
atgaacgatgatgaattgtttcgaagaacttcgttgatttctatgattcacgaacctccgttcaatcaaacaccaaagattgcctttatgtttttgacaa |
48324476 |
T |
|
| Q |
107 |
aaggtcccgtcttgttggctcctttttgggataaattcttcaaaggaaatgaagggatgtattcaatctacattcatccaagtccatctttcaatcaaac |
206 |
Q |
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|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48324475 |
aaggtcccgtcttgttagctcctttttgggagaaattcttcaaaggaaatgaagggatgtattcaatctacattcatccaagtccatctttcaatcaaac |
48324376 |
T |
|
| Q |
207 |
tgtttacagtgaaagatctgtgtttcatggccgaagaatctcaagcaaggtacacattcaaagattctcttttccttgagactttgttatttttatgtct |
306 |
Q |
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||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
48324375 |
ggtttacaatgaaagatctgtgtttcatggccgaagaatcccaagcaaggtacacattcaaagatcctctttttcttgagactttgttatttttatgtct |
48324276 |
T |
|
| Q |
307 |
cacaa-aaaacatacaattgtagcggtatttgtcatgtttctgattctcgactatattttagtctccaatacttagttcatattgaaacattttccttta |
405 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48324275 |
cacaaaaaaacatacaattgtagcggtatttgtcatgtttctgattctcgattatattttagtctccaatacttagttcatattgaaacattttccttta |
48324176 |
T |
|
| Q |
406 |
gtatgacaaacttattcattttttagtgcaaaaggcttgtattcactctcacatgtattccccaaaatgtggaatagttaattgaccatccaat |
499 |
Q |
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| T |
48324175 |
gtatgacaaacttattcattttttagtgcaaaaggcttg--ttcactctcacatgtattccccaaaatgtggaatagttaattgaccatccaat |
48324084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 101; Significance: 8e-50; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 35 - 259
Target Start/End: Complemental strand, 31269209 - 31268985
Alignment:
| Q |
35 |
cttcgttgatttctatgattcacgaacctccgttcaatcaaacaccaaagattgcctttatgtttttgacaaaaggtcccgtcttgttggctcctttttg |
134 |
Q |
| |
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||||| ||||| |||||||||| ||||||| ||||| |||| ||||||| |||| |||||||||||||| ||||| | || || ||||||||||| || |
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| T |
31269209 |
cttcgatgattcctatgattcataaacctccattcaaacaaataccaaaggttgcatttatgtttttgaccaaaggacatgttttattggctcctttgtg |
31269110 |
T |
|
| Q |
135 |
ggataaattcttcaaaggaaatgaagggatgtattcaatctacattcatccaagtccatctttcaatcaaactgtttacagtgaaagatctgtgtttcat |
234 |
Q |
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||| |||||||||||||||||||||||| ||||||| |||||||||||||||| ||| ||||||||| |||| ||||| | |||| || || |||||| |
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| T |
31269109 |
ggagaaattcttcaaaggaaatgaagggttgtattctatctacattcatccaaatccttctttcaatgaaacggtttatgatcaaagctcagtctttcat |
31269010 |
T |
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| Q |
235 |
ggccgaagaatctcaagcaaggtac |
259 |
Q |
| |
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|||||||||||| |||||||||||| |
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| T |
31269009 |
ggccgaagaatcccaagcaaggtac |
31268985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 7 - 267
Target Start/End: Original strand, 1136158 - 1136418
Alignment:
| Q |
7 |
atgaacgatgatgaattgtttcgaagaacttcgttgatttctatgattcacgaacctccgttcaatcaaacaccaaagattgcctttatgtttttgacaa |
106 |
Q |
| |
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|||||||| |||||||| ||| | ||| |||| ||| | |||||||||| || |||| || || |||||||||||| |||| || ||||| ||||||| |
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| T |
1136158 |
atgaacgaggatgaattattttggagagcttcattggctcctatgattcataaaactccatttaaacaaacaccaaaggttgcattcatgttcttgacaa |
1136257 |
T |
|
| Q |
107 |
aaggtcccgtcttgttggctcctttttgggataaattcttcaaaggaaatgaagggatgtattcaatctacattcatccaagtccatctttcaatcaaac |
206 |
Q |
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||||||| || ||||| ||||| ||||||| ||||||||||||||||| |||||| ||||||| |||||| ||||||| || || || |||||| |||| |
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| T |
1136258 |
aaggtcctgttttgttagctccgctttgggagaaattcttcaaaggaaacgaagggttgtattcgatctacgttcatcctagcccttccttcaatgaaac |
1136357 |
T |
|
| Q |
207 |
tgtttacagtgaaagatctgtgtttcatggccgaagaatctcaagcaaggtacacattcaa |
267 |
Q |
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||||| | | |||| | ||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
1136358 |
cgtttataatcaaagcttagtgtttcatggccgaagaatcccaagcaaggtatgcattcaa |
1136418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 47 - 258
Target Start/End: Original strand, 1139409 - 1139620
Alignment:
| Q |
47 |
ctatgattcacgaacctccgttcaatcaaacaccaaagattgcctttatgtttttgacaaaaggtcccgtcttgttggctcctttttgggataaattctt |
146 |
Q |
| |
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|||||||||| || |||| || || |||||||||||| |||| || ||||| |||||||||||||| | ||||||||||| ||||||| |||||||| |
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| T |
1139409 |
ctatgattcataaaactccatttaaacaaacaccaaaggttgcattcatgttcttgacaaaaggtcctattttgttggctccgctttgggagaaattctt |
1139508 |
T |
|
| Q |
147 |
caaaggaaatgaagggatgtattcaatctacattcatccaagtccatctttcaatcaaactgtttacagtgaaagatctgtgtttcatggccgaagaatc |
246 |
Q |
| |
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|||||||| |||||| ||||||| |||||| ||||||| ||||| || |||||| |||| ||||| | | |||| || |||||| |||||||||||||| |
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| T |
1139509 |
taaaggaaacgaagggttgtattcgatctacgttcatcctagtccttccttcaatgaaacagtttataatcaaagctcagtgttttatggccgaagaatc |
1139608 |
T |
|
| Q |
247 |
tcaagcaaggta |
258 |
Q |
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||||||||||| |
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| T |
1139609 |
ccaagcaaggta |
1139620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 47 - 282
Target Start/End: Complemental strand, 54479328 - 54479092
Alignment:
| Q |
47 |
ctatgattcacgaacctccgttcaatcaaacaccaaagattgcctttatgtttttgacaaaaggtcccgtcttgttggctcctttttgggataaattctt |
146 |
Q |
| |
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|||||||||| || |||| ||||| |||||||||||| |||| |||||||| ||||||| |||||| || ||||||||||| ||||||| |||||||| |
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| T |
54479328 |
ctatgattcataaaactccattcaaacaaacaccaaaggttgcgtttatgttcttgacaataggtcctgttttgttggctccactttgggagaaattctt |
54479229 |
T |
|
| Q |
147 |
caaaggaaatgaagggatgtattcaatctacattcatccaagtccatctttcaatcaaactgtttacagtgaaagatctgtgtttcatggccgaagaatc |
246 |
Q |
| |
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|||||||||||||||| | ||||| |||||||| ||||| | ||| ||||||||| ||| ||||| | | |||| || |||||||||| ||||||||| |
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| T |
54479228 |
caaaggaaatgaagggttatattctatctacatacatcctaatccttctttcaatgaaatggtttatactcaaagctcagtgtttcatgatcgaagaatc |
54479129 |
T |
|
| Q |
247 |
tcaagcaaggtacacattc-aaagattctcttttcct |
282 |
Q |
| |
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||||||||||| |||| ||| ||||||||||||| |
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|
| T |
54479128 |
ccaagcaaggtatcaattcaaaatattctcttttcct |
54479092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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