View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13943_low_11 (Length: 509)
Name: NF13943_low_11
Description: NF13943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13943_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 134; Significance: 2e-69; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 19 - 215
Target Start/End: Original strand, 25493366 - 25493560
Alignment:
| Q |
19 |
gatctgggcctgcacttcggtgttattctcctcgagacattgactctgaattaatggctgcaactctcgtaatttccttagaaatggtggcatttcgata |
118 |
Q |
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| T |
25493366 |
gatctgggcctgcacttcgatgttattctcctcgagacattgactctgaattaatggatgcaactcgc--agtttccttagaaatggtggcatttcgata |
25493463 |
T |
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| Q |
119 |
gattttaatgcaaaggctgcatatgccagtaagatcctgaaatggtaagttctatgaaattcaagtatgattgatgtcctttttggtaaatttaaac |
215 |
Q |
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| T |
25493464 |
gattttaatgcaaaggttgcacataccagtaagatcctgaaatggtaagttctatgagattctaatatgattgatgttcttttaggtagatttaaac |
25493560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 355 - 473
Target Start/End: Original strand, 25494062 - 25494176
Alignment:
| Q |
355 |
atggtgtatttaatgttgggttcaatgaagtggttattgaacttcagttaaggacaaactactcgagagaatttgagtttgatttttggctgagcaaact |
454 |
Q |
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| T |
25494062 |
atggtgtatttaatattgggttcaa----gtgattattgaccttcagttaaggacgaactactcgagaggatttgagtttgaattttggttaagcaaact |
25494157 |
T |
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| Q |
455 |
ttatttatctctgatcaaa |
473 |
Q |
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| T |
25494158 |
ttatttgtgtccgatcaaa |
25494176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 171
Target Start/End: Original strand, 33184493 - 33184643
Alignment:
| Q |
19 |
gatctgggcctgcacttcggtgttattctcctcgagacattgactctgaattaatggctgcaactctcgtaatttccttagaaatggtggcatttcgata |
118 |
Q |
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||||||||||||| ||||| || ||||||||| || | |||||| |||||| ||| ||||| ||||||||||||| |||| ||| || || ||| |
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| T |
33184493 |
gatctgggcctgcccttcgatgctattctcctggaaaaattgacgaagaattattggatgcaa--ctcgtaatttcctaagaagtggaggtcttgtgatt |
33184590 |
T |
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| Q |
119 |
gattttaatgcaaaggctgcatatgccagtaagatcctgaaatggtaagttct |
171 |
Q |
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||||| | |||||| ||||||||| ||| ||||| || ||||||| |||||| |
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| T |
33184591 |
gatttgacggcaaagactgcatatgtcagcaagattcttaaatggttagttct |
33184643 |
T |
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