View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13943_low_17 (Length: 467)

Name: NF13943_low_17
Description: NF13943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13943_low_17
NF13943_low_17
[»] chr2 (1 HSPs)
chr2 (17-450)||(34186600-34187034)
[»] chr1 (1 HSPs)
chr1 (17-199)||(40882935-40883118)
[»] chr6 (1 HSPs)
chr6 (17-205)||(16722959-16723148)
[»] chr4 (2 HSPs)
chr4 (16-123)||(43273613-43273721)
chr4 (13-111)||(43303869-43303968)
[»] chr8 (3 HSPs)
chr8 (59-137)||(35029469-35029547)
chr8 (13-109)||(4992539-4992636)
chr8 (23-117)||(3912896-3912991)
[»] scaffold0189 (1 HSPs)
scaffold0189 (74-137)||(6350-6413)
[»] chr7 (3 HSPs)
chr7 (67-138)||(23887339-23887410)
chr7 (67-138)||(23898515-23898586)
chr7 (98-139)||(44433683-44433724)
[»] chr3 (1 HSPs)
chr3 (59-137)||(52250939-52251017)
[»] scaffold0016 (1 HSPs)
scaffold0016 (59-136)||(28029-28106)
[»] chr5 (1 HSPs)
chr5 (84-132)||(42039525-42039573)


Alignment Details
Target: chr2 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 17 - 450
Target Start/End: Complemental strand, 34187034 - 34186600
Alignment:
Q  17 tgtaaaattaaactgcaaagtaacactgcgaagtaaagtaac-cactcccgtaacatatcctcctctaacacccacaaccgtctcctccacctccacgcc 115  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34187034 tgtaaaattaaactgcaaagtaacactgcgaagtaatgtaacacactcccgtaacatatcctcctctaacacccacaaccgtctcctccacctccacgcc 34186935  T
Q  116 gctcccccgtcctcccacccaagagctgaaataaatgaaacggtacatgatttttcaactactagctcaaataaacgcctaaaacgcacatctttaaaca 215  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34186934 gctcccccgtcctcccacccaagagctgaaataaacgaaacagtacatgatttttcaactactagctcaaataaacgcctaaaacgcacatctttaaaca 34186835  T
Q  216 tatcaatctcatggtattgtaactcgtatttctattgcggattgctattttcatgttgcatcaatttttatccggttgtgatttgtgaattgacaatggt 315  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  34186834 tatcaatctcatggtgctgtaactcgtatttctattgcggattgctattttcatgttgcatcaatttttatccggttgtaatttgtgaattgacaatggt 34186735  T
Q  316 gcttcaaaaagttattttcgggttacccaaataaattaattctctttcttgttttatattttatttggttagaaaatgtttaattgtattatctaaaatg 415  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  34186734 gcttcaaaaagttatttttgggttacccaaataaattaattctctttcttgttttatattttatttggttagaaaatgtttaattgtataaactaaaatg 34186635  T
Q  416 tttaaagcataatatattgagtcaaagaagtctat 450  Q
    |||||||||||||||||||||||||||||||||||    
T  34186634 tttaaagcataatatattgagtcaaagaagtctat 34186600  T

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Target: chr1 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 17 - 199
Target Start/End: Original strand, 40882935 - 40883118
Alignment:
Q  17 tgtaaaattaaactgcaaagtaacactgcgaagtaaagtaac-cactcccgtaacatatcctcctctaacacccacaaccgtctcctccacctccacgcc 115  Q
    ||||| |||||||| ||||| || |||||||||||||||||| || |||| |||||||||||| ||  ||||||||| | ||||||||||||||||||||    
T  40882935 tgtaacattaaactacaaagaaaaactgcgaagtaaagtaacacattcccttaacatatcctcttcccacacccacagctgtctcctccacctccacgcc 40883034  T
Q  116 gctcccccgtcctcccacccaagagctgaaataaatgaaacggtacatgatttttcaactactagctcaaataaacgcctaaaa 199  Q
    || ||| ||||||||||||| |||||||| ||||  ||||| ||||||||||| ||| || |||||||||||||| ||||||||    
T  40883035 gcccccgcgtcctcccacccgagagctgacataagcgaaacagtacatgatttatcatctgctagctcaaataaaggcctaaaa 40883118  T

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Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 17 - 205
Target Start/End: Complemental strand, 16723148 - 16722959
Alignment:
Q  17 tgtaaaattaaactgcaaagtaacactgcgaagtaaagtaac-cactcccgtaacatatcctcctctaacacccacaaccgtctcctccacctccacgcc 115  Q
    ||||| |||||||||||||| |||||||||||||||||| || ||||||| |||||||||||| ||  |  ||||||||| ||||||||| |||||| ||    
T  16723148 tgtaacattaaactgcaaagaaacactgcgaagtaaagtgacacactcccctaacatatcctcttcccaagcccacaaccatctcctccatctccacacc 16723049  T
Q  116 gctcccccgtcctcccacccaagagctgaaataaatgaaacggtacatgatttttcaactactagctcaaataaacgcctaaaacgcaca 205  Q
    || |||||| |||||||| | |||||||| || | ||| |  |||||  | || ||| |  ||||||||||||||| |||||| ||||||    
T  16723048 gcgcccccgacctcccactcgagagctgacatcagtgacatagtacaatacttatcaccagctagctcaaataaacacctaaagcgcaca 16722959  T

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Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 16 - 123
Target Start/End: Original strand, 43273613 - 43273721
Alignment:
Q  16 atgtaaaattaaactgcaaagtaacactgcgaagtaaagtaac-cactcccgtaacatatcctcctctaacacccacaaccgtctcctccacctccacgc 114  Q
    |||||| ||||||||| |||| |||| ||||||||||| | || ||||||| |||||||||||||||  | ||||||||||||||||||||||||||||     
T  43273613 atgtaacattaaactgaaaagaaacattgcgaagtaaaatgacacactcccctaacatatcctcctcccaaacccacaaccgtctcctccacctccacgt 43273712  T
Q  115 cgctccccc 123  Q
    ||| |||||    
T  43273713 cgcgccccc 43273721  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 43303869 - 43303968
Alignment:
Q  13 aatatgtaaaattaaactgcaaagtaacactgcgaagtaaagtaac-cactcccgtaacatatcctcctctaacacccacaaccgtctcctccacctcca 111  Q
    ||||||||| ||||||||| |||| |||| ||||||||||| | || ||||||| |||||||||||||||| | ||||||| ||||||||||||||||||    
T  43303869 aatatgtaacattaaactgaaaagaaacattgcgaagtaaaatgacacactcccctaacatatcctcctctcaaacccacatccgtctcctccacctcca 43303968  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 59 - 137
Target Start/End: Original strand, 35029469 - 35029547
Alignment:
Q  59 cactcccgtaacatatcctcctctaacacccacaaccgtctcctccacctccacgccgctcccccgtcctcccacccaa 137  Q
    ||||||| |||||| ||||||||  ||||||||||||  ||||||||||||||| ||||||||||  ||||||||||||    
T  35029469 cactcccctaacatctcctcctcccacacccacaaccccctcctccacctccaccccgctcccccaacctcccacccaa 35029547  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 109
Target Start/End: Complemental strand, 4992636 - 4992539
Alignment:
Q  13 aatatgtaaaattaaactgcaaagtaacactgcgaagtaaagtaac-cactcccgtaacatatcctcctctaacacccacaaccgtctcctccacctc 109  Q
    ||||||||| |||| ||  ||||| |||| ||||||||||||| || ||||||| |||||||||||||||| |  |||||||  ||||||||||||||    
T  4992636 aatatgtaatattacacatcaaagaaacattgcgaagtaaagtgacacactcccctaacatatcctcctctcaagcccacaaatgtctcctccacctc 4992539  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 23 - 117
Target Start/End: Complemental strand, 3912991 - 3912896
Alignment:
Q  23 attaaactgcaaagtaacactgcgaagtaaagtaac-cactcccgtaacatatcctcctctaacacccacaaccgtctcctccacctccacgccgc 117  Q
    |||||| ||||||| ||||||  |||||||||| |  ||||||| || ||| ||||||||  |||||||||||||||| |||||||||||| ||||    
T  3912991 attaaattgcaaagaaacactatgaagtaaagtgatacactcccctagcatttcctcctcccacacccacaaccgtcttctccacctccaccccgc 3912896  T

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Target: scaffold0189 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 137
Target Start/End: Original strand, 6350 - 6413
Alignment:
Q  74 tcctcctctaacacccacaaccgtctcctccacctccacgccgctcccccgtcctcccacccaa 137  Q
    ||||||||  |||||||||| ||||||||||| ||||||||||| || || |||||||| ||||    
T  6350 tcctcctcccacacccacaaacgtctcctccaactccacgccgcaccaccatcctcccaaccaa 6413  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 138
Target Start/End: Original strand, 23887339 - 23887410
Alignment:
Q  67 taacatatcctcctctaacacccacaaccgtctcctccacctccacgccgctcccccgtcctcccacccaag 138  Q
    |||||| || |||||  |||||||||  | ||||||||||||||||||| ||||||| |||||||| |||||    
T  23887339 taacatctcttcctcccacacccacagtcttctcctccacctccacgccactcccccttcctcccaaccaag 23887410  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 138
Target Start/End: Original strand, 23898515 - 23898586
Alignment:
Q  67 taacatatcctcctctaacacccacaaccgtctcctccacctccacgccgctcccccgtcctcccacccaag 138  Q
    |||||| || |||||  |||||||||  | ||||||||||||||||||| ||||||| |||||||| |||||    
T  23898515 taacatctcttcctcccacacccacagtcttctcctccacctccacgccactcccccttcctcccaaccaag 23898586  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 139
Target Start/End: Original strand, 44433683 - 44433724
Alignment:
Q  98 ctcctccacctccacgccgctcccccgtcctcccacccaaga 139  Q
    |||||||| ||||| |||||||||||||||||||| ||||||    
T  44433683 ctcctccaactccatgccgctcccccgtcctcccatccaaga 44433724  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 137
Target Start/End: Complemental strand, 52251017 - 52250939
Alignment:
Q  59 cactcccgtaacatatcctcctctaacacccacaaccgtctcctccacctccacgccgctcccccgtcctcccacccaa 137  Q
    ||||||| || ||| ||||||||  ||||||||||||  || |||||||||||  ||||||||||  ||||||||||||    
T  52251017 cactcccctagcatctcctcctcccacacccacaacccccttctccacctccaacccgctcccccaacctcccacccaa 52250939  T

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Target: scaffold0016 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 136
Target Start/End: Original strand, 28029 - 28106
Alignment:
Q  59 cactcccgtaacatatcctcctctaacacccacaaccgtctcctccacctccacgccgctcccccgtcctcccaccca 136  Q
    ||||||| || ||| ||||||||  ||||||||||||  || ||||| ||||| |||||||||||  |||||||||||    
T  28029 cactcccctagcatctcctcctcccacacccacaacccccttctccaactccaagccgctcccccaacctcccaccca 28106  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 132
Target Start/End: Complemental strand, 42039573 - 42039525
Alignment:
Q  84 acacccacaaccgtctcctccacctccacgccgctcccccgtcctccca 132  Q
    |||||||||||| ||||||||| ||||||||  ||||||| ||||||||    
T  42039573 acacccacaaccttctcctccaactccacgcttctcccccatcctccca 42039525  T

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