View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13943_low_19 (Length: 462)
Name: NF13943_low_19
Description: NF13943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13943_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 13 - 449
Target Start/End: Original strand, 395632 - 396080
Alignment:
| Q |
13 |
aatattggagtagttgaggttagttagttagttagttattcttggtgaatgtcgttaacatcaccattttccaaccaaattgaaggattcatcaattata |
112 |
Q |
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| T |
395632 |
aatattgaagtagttgaggttagttagttagttagttattcttggtgaatgtcgttaacatcgccatttgccaaccaaattgaaggattcatcaattata |
395731 |
T |
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| Q |
113 |
tactgataatatatgtttggttttatnnnnnnnnnn-ttaaaataggcgacagaaagaaatcatgtcaatggagaagtggcagatggaaagagtaaagga |
211 |
Q |
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| T |
395732 |
ta---------tatgtttggttttataaaaaaaaaaattaaaataggcgacagaaggaaatcatgtcaatggagaagtggcagatggaaagagtaaagga |
395822 |
T |
|
| Q |
212 |
ggatggacaactgcatacatcttgctaggtactataagctaatcatttgtttgattcatcattatcattatatatacatggtaattgt------------ |
299 |
Q |
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| T |
395823 |
ggatggacaactgcatacatcttgctaggtactataagctaatcatttgtttgattcatcattatcattatatatacatggtaattgtaattaaatgaac |
395922 |
T |
|
| Q |
300 |
--------aattaaatgaatgaatgaatgcagctaatcaagcactggcaacactggcattctttggagttggagtgaacttggttctgttcctaacgaga |
391 |
Q |
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| T |
395923 |
taagttgaaattaaatgaatgaatgaatgcagctaatcaagcactggcaacactagcattctttggagttggagtgaacttggttctgttcctaacgaga |
396022 |
T |
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| Q |
392 |
gtccttcgtcaagacagtgccgaggctgctaataatgtcagcttgtggactggaactg |
449 |
Q |
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| T |
396023 |
gtccttcgtcaagacagtgccgaggctgctaataatgtcagcttgtggactggaactg |
396080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 35 - 449
Target Start/End: Complemental strand, 3805077 - 3804630
Alignment:
| Q |
35 |
gttagttagttagttattcttggtgaatgtcgttaacatcaccattttccaaccaaattgaaggattcatcaattatatactgataatatatgtttggt- |
133 |
Q |
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| T |
3805077 |
gttagttagttagttattcttggtgaatgtcgttaacattgccattttcgaaccaagt-gaaggattcgtcaattatatattaataatatatgtttggtt |
3804979 |
T |
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| Q |
134 |
--------------tttatnnnnnnnnnnttaaaataggcgacagaaagaaatcatgtcaatggagaagtggcagatggaaagagtaaaggaggatggac |
219 |
Q |
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| T |
3804978 |
atatactgtttggttttataaaaaataaattaaaataggtgatagaaggaaatcatgttaatggaaaaatggcaattgggaagagaaaaggaggatggaa |
3804879 |
T |
|
| Q |
220 |
aactgcatacatcttgctaggtactataagctaatcatt---tgtttgattcatcattatcattatatatacatggtaattgtaattaaatgaa------ |
310 |
Q |
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| T |
3804878 |
aactgcatacatcttgctaggtactgtaaactaatcattaattatttgactcatcattatcaatatatatacatggtaattgtaattaaatgaactaagt |
3804779 |
T |
|
| Q |
311 |
----------tgaatgaatgcagctaatcaagcactggcaacactggcattctttggagttggagtgaacttggttctgttcctaacgagagtccttcgt |
400 |
Q |
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| T |
3804778 |
ggaaattaaatgaacgaatgcagctaatcaagcattggcaacactggcattctttggtgttggagtgaacttggttctgttcctaacaagagtccttcgt |
3804679 |
T |
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| Q |
401 |
caagacagtgccgaggctgctaataatgtcagcttgtggactggaactg |
449 |
Q |
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||||||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
3804678 |
caagacagtgccgaggctgctaacaatgtcagcaagtggactggaactg |
3804630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 317 - 447
Target Start/End: Complemental strand, 52811385 - 52811255
Alignment:
| Q |
317 |
aatgcagctaatcaagcactggcaacactggcattctttggagttggagtgaacttggttctgttcctaacgagagtccttcgtcaagacagtgccgagg |
416 |
Q |
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||||||| |||||||||||||| || | || |||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||| |||||| | |
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| T |
52811385 |
aatgcagtgaatcaagcactggctactttagctttctttggagttggagtgaacttggttctgttcctaactagagttcttggtcaagacaatgccgaag |
52811286 |
T |
|
| Q |
417 |
ctgctaataatgtcagcttgtggactggaac |
447 |
Q |
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||||||||||||| ||| |||||| ||||| |
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| T |
52811285 |
ctgctaataatgtgagcaagtggacaggaac |
52811255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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