View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13943_low_2 (Length: 772)

Name: NF13943_low_2
Description: NF13943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13943_low_2
NF13943_low_2
[»] chr5 (3 HSPs)
chr5 (17-665)||(42677856-42678504)
chr5 (475-608)||(42677241-42677362)
chr5 (476-608)||(42677736-42677868)
[»] chr3 (1 HSPs)
chr3 (17-246)||(54704244-54704476)


Alignment Details
Target: chr5 (Bit Score: 589; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 17 - 665
Target Start/End: Complemental strand, 42678504 - 42677856
Alignment:
Q  17 tgaatgatgtttagagcatcaacgttggctttcaagtaactgtattgctcgttaggttggaggcgacggcggactgtgggtgaatgaacaattccaggaa 116  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42678504 tgaataatgtttagagcatcaacgttggctttcaagtaactgtattgctcgttaggttggaggcgacggcggactgtgggtgaatgaacaattccaggaa 42678405  T
Q  117 attcagtgtccattgagatgaaattgtatttaccaattaactgactaatgagcttgaattcgcaagacaaattgtatccccacactttacggatcatgat 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42678404 attcagtgtccattgagatgaaattgtatttaccaattaactgactaatgagcttgaattcgcaagacaaattgtatccccacactttacggatcatgat 42678305  T
Q  217 tggttttgaactaggctcttccttcatcattatcattgtggtcttgaatcaggtacaagttgaaattctgagcaagaaacgatgagaaagaatgttaacc 316  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  42678304 tggttttgaaccagggtcttccttcatcattatcattgtggtcttgaatcaggtacaagttgaaattctgagcaagaaacgatgagaaagaatgttaaca 42678205  T
Q  317 acccaatnnnnnnnnttctctcagcaatatttaaacattatacaactagcagcagcatgtgtaaaagagggggttaatgtggtgaatttaaaacgcacaa 416  Q
    | |||||        ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  42678204 aaccaataaaaaaaattctctcagcaatatttaaacattaaacaactagcagcagcatgtgtaaaagagggggttaatgtggtgaatttacaacgcacaa 42678105  T
Q  417 gcataacttaattaactaacaactattcattctctaactctaacatcaacaccagaaacagtaaagaagggaggataaataaaatatgctttcagaaaat 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42678104 gcataacttaattaactaacaactattcattctctaactctaacatcaacaccagaaacagtaaagaagggaggataaataaaatatgctttcagaaaat 42678005  T
Q  517 cattaccaaatttaaagaaagaaatagtcataaatttaagaagtaaaaatacccagaagcaaagcgacactatcacaagaaattcagaatttatttaaca 616  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  42678004 cattaccaaatttaaagaaagaaatagtcataaatttaagaagtaaaaatacccagaagtaaagagacactatcacaagaaattcagaatttatttaaca 42677905  T
Q  617 agtatatccattctagcaacataaaaacacttccagagtaaagaaggga 665  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  42677904 agtatatccattctagcaacataaaaacacttccagagtaaagaaggga 42677856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 475 - 608
Target Start/End: Complemental strand, 42677362 - 42677241
Alignment:
Q  475 cagtaaagaagggaggataaataaaatatgctttcagaaaatcattaccaaatttaaagaaagaaatagtcataaatttaagaagtaaaaatacccagaa 574  Q
    |||||||||||||| |||||||||||||| |||||||||||||||          ||||||| ||||  | |||||||||||||||||||||||| ||||    
T  42677362 cagtaaagaagggaagataaataaaatatactttcagaaaatcat----------aaagaaa-aaatc-tgataaatttaagaagtaaaaatacctagaa 42677275  T
Q  575 gcaaagcgacactatcacaagaaattcagaattt 608  Q
    |||||| || ||||| ||| |||| |||||||||    
T  42677274 gcaaagagatactatgacatgaaactcagaattt 42677241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 476 - 608
Target Start/End: Complemental strand, 42677868 - 42677736
Alignment:
Q  476 agtaaagaagggaggataaataaaatatgctttcagaaaatcattaccaaatttaaagaaag-aaatagtcataaatttaagaagtaaaaatacccagaa 574  Q
    ||||||||||||||||  |||||||||| ||||| ||||||||||| ||||  ||||||||| ||| |||| | ||||||| ||||||||||||| ||||    
T  42677868 agtaaagaagggaggagtaataaaatatactttctgaaaatcattatcaaacgtaaagaaagaaaaaagtc-tgaatttaataagtaaaaatacctagaa 42677770  T
Q  575 gcaaagcgacactatcacaagaaattcagaattt 608  Q
     ||||  || | ||||||| |||| ||| |||||    
T  42677769 acaaaaagataatatcacatgaaactcaaaattt 42677736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 54704244 - 54704476
Alignment:
Q  17 tgaatgatgtttagagcatcaacgttggctttcaagtaactgtattgctcgttaggttggaggcgacggcgg---actgtgggtgaatgaacaattccag 113  Q
    |||||||| || ||||||||||| || | |||||| ||||||||||| |||| |||||||||  ||||| ||   ||| || ||| |  || ||  ||||    
T  54704244 tgaatgattttaagagcatcaacatttgatttcaaataactgtattgttcgtaaggttggagatgacggtggtcgactttgagtggaaaaataacgccag 54704343  T
Q  114 gaaattcagtgtccattgagatgaaattgtatttaccaattaactgactaatgagcttgaattcgcaagacaaattgtatccccacactttacggatcat 213  Q
    |||||||||| ||||||||||||||||||||| | ||||  ||   || |||||| ||||||||      || ||||| | |||| |||| ||| |||||    
T  54704344 gaaattcagtatccattgagatgaaattgtatgttccaacaaatccacgaatgagattgaattcctcttgcagattgtgtgcccaaacttcacgtatcat 54704443  T
Q  214 gattggttttgaactaggctcttccttcatcat 246  Q
    |||||||| ||||||||| ||||||||| ||||    
T  54704444 gattggttctgaactaggatcttccttcgtcat 54704476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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