View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13943_low_21 (Length: 431)
Name: NF13943_low_21
Description: NF13943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13943_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 402; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 18 - 419
Target Start/End: Original strand, 47280446 - 47280847
Alignment:
| Q |
18 |
tggagatgggttgccacgtcttcccttgtaatattttcaacattcatcaaatcaaaaatctttttgggtacagcctctgccagtaaaacaacattaacat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47280446 |
tggagatgggttgccacgtcttcccttgtaatattttcaacattcatcaaatcaaaaatctttttgggtacagcctctgccagtaaaacaacattaacat |
47280545 |
T |
|
| Q |
118 |
tagacttaaactcgagttcagtaatggaatacttcatgacttgactaaaacataaaccagatattcaaaaataatttaatagtttaaaatgagaaataaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47280546 |
tagacttaaactcgagttcagtaatggaatacttcatgacttgactaaaacataaaccagatattcaaaaataatttaatagtttaaaatgagaaataaa |
47280645 |
T |
|
| Q |
218 |
attcggtaaagctcgaggaaattgataggatataaaaatagttctagtgttgcagagagagtgaagaacatactgtcaactcctaactgattaacagttt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47280646 |
attcggtaaagctcgaggaaattgataggatataaaaatagttctagtgttgcagagagagtgaagaacatactgtcaactcctaactgattaacagttt |
47280745 |
T |
|
| Q |
318 |
caagaaacttgcggtgcagctccacagaccaaacaaactgggactccttattccgaattacatgctgccaaatgttccttagctcctccaatctcacagg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47280746 |
caagaaacttgcggtgcagctccacagaccaaacaaactgggactccttattccgaattacatgctgccaaatgttccttagctcctccaatctcacagg |
47280845 |
T |
|
| Q |
418 |
tt |
419 |
Q |
| |
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|| |
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| T |
47280846 |
tt |
47280847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 171 - 353
Target Start/End: Original strand, 49060519 - 49060699
Alignment:
| Q |
171 |
aaaccagatattcaaaaataatttaatagtttaaaatgagaaataaaattcggtaaagctcgaggaaattgataggatataaaaatagttctagtgttgc |
270 |
Q |
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|||||||||||||||||| | ||| ||| | |||||| |||||||||||| |||||||||||||||||||||| ||||||||||| ||| ||||||| |
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| T |
49060519 |
aaaccagatattcaaaaacattttgataatgtaaaatttgaaataaaattcagtaaagctcgaggaaattgataagatataaaaattgttt--gtgttgc |
49060616 |
T |
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| Q |
271 |
agagagagtgaagaacatactgtcaactcctaactgattaacagtttcaagaaacttgcggtgcagctccacagaccaaacaa |
353 |
Q |
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|| |||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
49060617 |
aggcagagtgaagaacatactgtcaatgcctaactgattaacagcagcaacaaacttgcggtgcagctccacagaccaaacaa |
49060699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 202 - 362
Target Start/End: Original strand, 47274917 - 47275075
Alignment:
| Q |
202 |
taaaatgagaaataaaattcggtaaagctcgaggaaattgataggatataaaaatagttctagtgttgcagagagagtgaagaacatactgtcaactcct |
301 |
Q |
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||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||| ||||||| || |||||| ||||||||||||||| ||| |
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| T |
47274917 |
taaaatgagaaataaaaatcggtcaagctcgaggaaattgataggatataaaaattgttt--gtgttgcggacagagtggagaacatactgtcaatgcct |
47275014 |
T |
|
| Q |
302 |
aactgattaacagtttcaagaaacttgcggtgcagctccacagaccaaacaaactgggact |
362 |
Q |
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||||||||||||| ||| ||| ||| ||||||||||||||||||||||| ||||||||| |
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| T |
47275015 |
aactgattaacagcagcaacaaatttgtggtgcagctccacagaccaaacagactgggact |
47275075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 19 - 157
Target Start/End: Original strand, 47274665 - 47274801
Alignment:
| Q |
19 |
ggagatgggttgccacgtcttcccttgtaatattttcaacattcatcaaatcaaaaatctttttgggtacagcctctgccagtaaaacaacattaacatt |
118 |
Q |
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|||||||| | |||||||| |||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
47274665 |
ggagatggctcgccacgtcctcccttgtaatattttcaacattcatcaaaccaagaatcttttcaggtacagcctctgccagtaaaacaacattaacatg |
47274764 |
T |
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| Q |
119 |
agacttaaactcgagttcagtaatggaatacttcatgac |
157 |
Q |
| |
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||||| |||| |||||||||||| || |||||||||| |
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| T |
47274765 |
agact--cactcaagttcagtaatgaaacacttcatgac |
47274801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 49060318 - 49060411
Alignment:
| Q |
18 |
tggagatgggttgccacgtcttcccttgtaatattttcaacattcatcaaatcaaaaatctttttgggtacagcctctgccagtaaaacaacat |
111 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||| |||||||||| ||||| ||| |||||||||||||||||||| ||||||||||||| |
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| T |
49060318 |
tggagatggcttgccacgttctcccttgtaatattttcgacattcatcatatcaagaatttttttgggtacagcctctgcaagtaaaacaacat |
49060411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 359 - 419
Target Start/End: Original strand, 49060903 - 49060963
Alignment:
| Q |
359 |
gactccttattccgaattacatgctgccaaatgttccttagctcctccaatctcacaggtt |
419 |
Q |
| |
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|||| ||| |||| |||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
49060903 |
gacttcttcttcctaattacatgctgccaaatgttctttagctcctctaatctcacaggtt |
49060963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 368 - 419
Target Start/End: Original strand, 47275111 - 47275162
Alignment:
| Q |
368 |
ttccgaattacatgctgccaaatgttccttagctcctccaatctcacaggtt |
419 |
Q |
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|||||||||||||||||||||||| || ||||||||| ||||||||||||| |
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| T |
47275111 |
ttccgaattacatgctgccaaatggtctttagctcctgtaatctcacaggtt |
47275162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 2894029 - 2893950
Alignment:
| Q |
18 |
tggagatgggttgccacgtcttcccttgtaatattttcaacattcatcaaatcaaaaatctttttgggtacagcctctgc |
97 |
Q |
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| T |
2894029 |
tggagatggctggccaccttttcccttgtcagattttcaacattcatcagttcaagaatctttttgggtacagcctctgc |
2893950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 94
Target Start/End: Complemental strand, 2889447 - 2889392
Alignment:
| Q |
39 |
tcccttgtaatattttcaacattcatcaaatcaaaaatctttttgggtacagcctc |
94 |
Q |
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|||||||| | ||||||||||||||||| |||| ||||||||| ||||||||||| |
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|
| T |
2889447 |
tcccttgtcagattttcaacattcatcagttcaagaatctttttcggtacagcctc |
2889392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 48869590 - 48869682
Alignment:
| Q |
18 |
tggagatgggttgccacgtcttcccttgtaatattttcaacattcatcaaatcaaaaatctttttgggtacagcctctgccagtaaaacaaca |
110 |
Q |
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| T |
48869590 |
tggagatggctggccacattatcccttgtaagattttcaacattcatcaattcaagaatcttttttggtatagcatctgcaagcaaaataaca |
48869682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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