View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13943_low_27 (Length: 360)
Name: NF13943_low_27
Description: NF13943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13943_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 18 - 349
Target Start/End: Complemental strand, 17891320 - 17890992
Alignment:
| Q |
18 |
aattacatcaaattaactggactttaggctggggcaaccatttcatttgcaataagaagtatcatttcttattaccttcaaaggagacactaagtagctg |
117 |
Q |
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| T |
17891320 |
aattacatcaaattgactggaatttaggctggggaaaccatttcatttgcaataagaagtatcatttcctattaccttcaaaggagacactaagtagctg |
17891221 |
T |
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| Q |
118 |
cacaagctgtgaaagctgctgtgattcaaatggtacaacaatgaatattagtggtaagtccaacaaattaatagaattagagggacatatgatgcatggt |
217 |
Q |
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| T |
17891220 |
cacaagctgtgaaaactgctgtgattcaaatggtacaa---tgaatattagtggtaagtccaacaaattaatagaattagagggacatatgatgcatggt |
17891124 |
T |
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| Q |
218 |
gtatttcactctaatggatttgggcatttgctatgtgtcaatggattggaaactggttctaatttgggtggtaaccaaatcatggagttttggaatcgtt |
317 |
Q |
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| T |
17891123 |
gtatttcactctaatggatttgggcatttgctatgtgtcaatggattggaaactggttccaatttgggtggtaaccaaatcatggagttttggaatcgtt |
17891024 |
T |
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| Q |
318 |
tgtgcaatggattgcaagcaaggttagttcat |
349 |
Q |
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| T |
17891023 |
tgtgcaatggattacaagcaaggttagttcat |
17890992 |
T |
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