View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13943_low_28 (Length: 336)
Name: NF13943_low_28
Description: NF13943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13943_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 19 - 155
Target Start/End: Original strand, 8019377 - 8019513
Alignment:
| Q |
19 |
cgacaatcaacttcaatctggttgctacaagtttcgacaacactttgtgcatataccagaccagtgatatcagcctaaaatcatacaattgttaaggact |
118 |
Q |
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| T |
8019377 |
cgacaatcaacttcaatctggttgctacaactttcgacaacactttgtgcatatgccagactagtgatattagcctaaaatcatacaatcgttaaggact |
8019476 |
T |
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| Q |
119 |
aacaactttcataatcatatgcaattagttaaaacct |
155 |
Q |
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| T |
8019477 |
aacaactttcataatcatatgcaattagttaaaacct |
8019513 |
T |
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Target: chr2; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 267 - 323
Target Start/End: Original strand, 8019528 - 8019584
Alignment:
| Q |
267 |
tctagtatatcaaatatctcaacaaccttttaccatctctattgtacttggttattc |
323 |
Q |
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| T |
8019528 |
tctagtatatcaaatatctcaacaaccttttaccatctctattgtacttggttattc |
8019584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 238 - 315
Target Start/End: Complemental strand, 17746838 - 17746760
Alignment:
| Q |
238 |
agagagaacttgtgagtttgaataaacactctagtatatcaaatatctcaacaacctttta-ccatctctattgtactt |
315 |
Q |
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| T |
17746838 |
agagagaaactgtgagtttgaatcaacactctcgtatatcaaatatcttcacaaccttttatatatctctattgtactt |
17746760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 238 - 315
Target Start/End: Complemental strand, 19048158 - 19048080
Alignment:
| Q |
238 |
agagagaacttgtgagtttgaataaacactctagtatatcaaatatctcaacaacctttta-ccatctctattgtactt |
315 |
Q |
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| T |
19048158 |
agagagaaactgtgagtttgaatcaacactctcgtatatcaaatatcttcacaaccttttatatatctctattgtactt |
19048080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 249 - 296
Target Start/End: Original strand, 28001872 - 28001919
Alignment:
| Q |
249 |
gtgagtttgaataaacactctagtatatcaaatatctcaacaaccttt |
296 |
Q |
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| T |
28001872 |
gtgagtttgaatcgacactctagtatattaaatatctccacaaccttt |
28001919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 148 - 203
Target Start/End: Complemental strand, 12217309 - 12217255
Alignment:
| Q |
148 |
taaaacctattacagttagttaaaactaactacctggatagtttgtggaacaagtt |
203 |
Q |
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| T |
12217309 |
taaaacctattacagttagttacaactaacta-ctagataacttgtggaacaagtt |
12217255 |
T |
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