View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13943_low_29 (Length: 333)

Name: NF13943_low_29
Description: NF13943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13943_low_29
NF13943_low_29
[»] chr3 (32 HSPs)
chr3 (41-317)||(19646824-19647100)
chr3 (1-42)||(2239225-2239267)
chr3 (1-42)||(28097415-28097457)
chr3 (1-42)||(1589066-1589107)
chr3 (1-40)||(787099-787139)
chr3 (1-47)||(25126271-25126318)
chr3 (1-42)||(2118711-2118753)
chr3 (1-42)||(9153475-9153517)
chr3 (1-42)||(30761073-30761115)
chr3 (1-42)||(32205120-32205162)
chr3 (1-42)||(33576682-33576724)
chr3 (1-46)||(36567148-36567194)
chr3 (1-42)||(41223511-41223553)
chr3 (1-42)||(53531804-53531846)
chr3 (1-41)||(19914475-19914516)
chr3 (1-45)||(21841984-21842029)
chr3 (1-41)||(31117619-31117660)
chr3 (1-41)||(38511930-38511971)
chr3 (1-41)||(47943733-47943774)
chr3 (1-40)||(2118987-2119027)
chr3 (1-40)||(17483561-17483601)
chr3 (1-40)||(17483831-17483871)
chr3 (51-90)||(19653742-19653782)
chr3 (1-40)||(41282120-41282160)
chr3 (1-40)||(41722257-41722297)
chr3 (2-41)||(44624500-44624540)
chr3 (1-40)||(45760506-45760546)
chr3 (1-37)||(47922363-47922399)
chr3 (1-41)||(51187961-51188001)
chr3 (1-40)||(51213307-51213347)
chr3 (6-41)||(51860333-51860369)
chr3 (1-40)||(53191236-53191276)
[»] chr2 (29 HSPs)
chr2 (169-317)||(18773137-18773285)
chr2 (94-165)||(18762603-18762674)
chr2 (94-165)||(18773393-18773464)
chr2 (1-42)||(19025822-19025864)
chr2 (1-41)||(37334604-37334644)
chr2 (1-42)||(1467081-1467123)
chr2 (1-42)||(24205292-24205334)
chr2 (1-42)||(31784250-31784292)
chr2 (1-39)||(34981386-34981424)
chr2 (1-42)||(40493918-40493960)
chr2 (1-42)||(40711334-40711376)
chr2 (1-42)||(40938792-40938834)
chr2 (1-37)||(16238496-16238533)
chr2 (1-38)||(19885861-19885898)
chr2 (1-41)||(20436057-20436098)
chr2 (1-41)||(21024734-21024775)
chr2 (1-41)||(22194447-22194488)
chr2 (1-41)||(24895184-24895225)
chr2 (1-41)||(31784524-31784565)
chr2 (1-41)||(33004708-33004749)
chr2 (1-37)||(34981655-34981692)
chr2 (1-38)||(35173087-35173124)
chr2 (1-41)||(41072101-41072142)
chr2 (10-42)||(2638818-2638850)
chr2 (10-46)||(18296717-18296753)
chr2 (1-40)||(21552541-21552581)
chr2 (1-40)||(22194721-22194761)
chr2 (1-40)||(38731279-38731319)
chr2 (1-40)||(39642729-39642769)
[»] chr8 (41 HSPs)
chr8 (1-42)||(36624184-36624225)
chr8 (1-41)||(29197298-29197338)
chr8 (1-41)||(38701933-38701973)
chr8 (1-42)||(5734182-5734224)
chr8 (1-42)||(7150840-7150882)
chr8 (1-41)||(4146784-4146825)
chr8 (1-41)||(37205539-37205580)
chr8 (1-42)||(2321514-2321556)
chr8 (1-42)||(6745267-6745309)
chr8 (1-42)||(8870534-8870576)
chr8 (1-42)||(17943356-17943398)
chr8 (1-42)||(18530830-18530872)
chr8 (1-42)||(23234053-23234095)
chr8 (1-42)||(37639505-37639547)
chr8 (1-42)||(41206405-41206447)
chr8 (1-42)||(44807348-44807390)
chr8 (1-41)||(414928-414969)
chr8 (1-41)||(6014418-6014459)
chr8 (1-41)||(6335601-6335642)
chr8 (1-41)||(7658601-7658642)
chr8 (1-41)||(15187927-15187968)
chr8 (1-41)||(16531522-16531563)
chr8 (1-41)||(33687760-33687801)
chr8 (1-42)||(36623903-36623944)
chr8 (1-41)||(37953373-37953414)
chr8 (1-41)||(42267455-42267496)
chr8 (1-37)||(42930891-42930928)
chr8 (1-41)||(45106434-45106475)
chr8 (1-41)||(45516193-45516234)
chr8 (1-40)||(4107121-4107161)
chr8 (1-40)||(4167473-4167513)
chr8 (1-40)||(6641871-6641911)
chr8 (10-46)||(9823385-9823421)
chr8 (1-41)||(10285102-10285142)
chr8 (1-40)||(14024313-14024353)
chr8 (1-40)||(16531248-16531288)
chr8 (1-40)||(23233781-23233821)
chr8 (1-40)||(23623421-23623461)
chr8 (1-40)||(27339816-27339856)
chr8 (1-41)||(34608652-34608692)
chr8 (1-40)||(42866366-42866406)
[»] chr1 (43 HSPs)
chr1 (1-42)||(26932581-26932622)
chr1 (1-42)||(14738-14780)
chr1 (1-42)||(7598879-7598921)
chr1 (1-41)||(16490973-16491014)
chr1 (1-41)||(44846917-44846958)
chr1 (1-42)||(52201364-52201405)
chr1 (1-41)||(21697147-21697187)
chr1 (5-49)||(51195957-51196001)
chr1 (3-41)||(15015-15054)
chr1 (1-40)||(6912217-6912256)
chr1 (1-42)||(1712368-1712410)
chr1 (1-42)||(8770461-8770503)
chr1 (1-42)||(11018675-11018717)
chr1 (1-46)||(15911666-15911712)
chr1 (1-46)||(23342234-23342280)
chr1 (1-42)||(32341765-32341807)
chr1 (1-42)||(39427409-39427451)
chr1 (1-42)||(42406881-42406923)
chr1 (1-42)||(49227118-49227160)
chr1 (1-42)||(52143438-52143480)
chr1 (1-42)||(6606534-6606575)
chr1 (1-37)||(6809342-6809379)
chr1 (1-41)||(20471685-20471726)
chr1 (1-41)||(20559811-20559852)
chr1 (1-37)||(22071166-22071203)
chr1 (1-41)||(22204304-22204345)
chr1 (1-41)||(23341963-23342004)
chr1 (1-41)||(26811452-26811493)
chr1 (1-41)||(33811698-33811739)
chr1 (1-41)||(33871168-33871209)
chr1 (1-41)||(37028927-37028968)
chr1 (1-41)||(39427686-39427727)
chr1 (1-41)||(43914853-43914894)
chr1 (1-41)||(45884947-45884988)
chr1 (1-40)||(6183255-6183295)
chr1 (1-40)||(6491689-6491729)
chr1 (1-48)||(12690013-12690061)
chr1 (1-40)||(13791848-13791888)
chr1 (1-40)||(21932061-21932101)
chr1 (1-40)||(22075624-22075664)
chr1 (1-40)||(27855563-27855603)
chr1 (1-40)||(38622676-38622716)
chr1 (1-40)||(52149787-52149827)
[»] chr7 (35 HSPs)
chr7 (1-41)||(37858326-37858366)
chr7 (1-41)||(45863022-45863062)
chr7 (1-40)||(17802181-17802220)
chr7 (1-42)||(10350804-10350846)
chr7 (1-42)||(23740262-23740304)
chr7 (1-41)||(16879234-16879275)
chr7 (1-42)||(17167853-17167894)
chr7 (1-41)||(38882369-38882410)
chr7 (1-40)||(42997325-42997365)
chr7 (1-51)||(10318880-10318931)
chr7 (1-42)||(3925791-3925833)
chr7 (1-42)||(18852493-18852535)
chr7 (1-42)||(23909893-23909935)
chr7 (1-42)||(29163098-29163140)
chr7 (1-42)||(34533486-34533528)
chr7 (1-42)||(43408477-43408519)
chr7 (1-41)||(930981-931022)
chr7 (1-37)||(7195459-7195496)
chr7 (1-41)||(9629289-9629330)
chr7 (1-41)||(19778527-19778568)
chr7 (1-41)||(21917523-21917564)
chr7 (1-41)||(25986924-25986965)
chr7 (1-41)||(30140919-30140960)
chr7 (1-41)||(35121686-35121727)
chr7 (1-42)||(36203994-36204035)
chr7 (1-41)||(37452322-37452363)
chr7 (1-41)||(47258962-47259003)
chr7 (1-40)||(388174-388214)
chr7 (1-40)||(4061261-4061301)
chr7 (1-40)||(8409093-8409133)
chr7 (1-40)||(10319166-10319206)
chr7 (1-40)||(26612616-26612656)
chr7 (1-40)||(30699297-30699337)
chr7 (1-40)||(38445679-38445719)
chr7 (1-41)||(40790944-40790984)
[»] scaffold2010 (1 HSPs)
scaffold2010 (1-54)||(479-533)
[»] chr6 (22 HSPs)
chr6 (1-42)||(11277624-11277666)
chr6 (1-45)||(1897152-1897197)
chr6 (1-40)||(9952188-9952227)
chr6 (1-42)||(2565076-2565118)
chr6 (1-42)||(2565352-2565394)
chr6 (1-42)||(31740767-31740809)
chr6 (1-42)||(34705374-34705416)
chr6 (1-42)||(378512-378553)
chr6 (1-41)||(2100654-2100695)
chr6 (1-37)||(10977931-10977968)
chr6 (1-41)||(11109007-11109048)
chr6 (1-41)||(11322298-11322339)
chr6 (1-41)||(14997008-14997049)
chr6 (1-41)||(29696847-29696888)
chr6 (1-41)||(30965690-30965731)
chr6 (1-40)||(1814976-1815016)
chr6 (1-40)||(8160599-8160639)
chr6 (1-40)||(10977658-10977698)
chr6 (1-40)||(11746252-11746292)
chr6 (1-48)||(20080110-20080158)
chr6 (1-40)||(28930737-28930777)
chr6 (1-40)||(32591876-32591916)
[»] scaffold0272 (2 HSPs)
scaffold0272 (1-41)||(10834-10875)
scaffold0272 (1-42)||(21122-21164)
[»] scaffold0047 (1 HSPs)
scaffold0047 (1-42)||(63337-63378)
[»] chr4 (39 HSPs)
chr4 (1-41)||(39332318-39332359)
chr4 (1-42)||(54606886-54606927)
chr4 (5-52)||(35835764-35835812)
chr4 (1-40)||(48277916-48277956)
chr4 (1-42)||(5344268-5344310)
chr4 (1-42)||(11530033-11530075)
chr4 (1-42)||(12640818-12640860)
chr4 (1-42)||(24296773-24296815)
chr4 (1-42)||(34362818-34362860)
chr4 (1-42)||(44921883-44921925)
chr4 (1-42)||(45289773-45289815)
chr4 (1-42)||(46282758-46282800)
chr4 (1-42)||(47853974-47854016)
chr4 (1-41)||(232964-233005)
chr4 (1-41)||(7644456-7644497)
chr4 (1-41)||(10046209-10046250)
chr4 (1-41)||(13607916-13607957)
chr4 (1-41)||(14578713-14578754)
chr4 (1-41)||(18988178-18988219)
chr4 (1-41)||(21537150-21537191)
chr4 (1-41)||(26675052-26675093)
chr4 (1-41)||(31250742-31250783)
chr4 (1-41)||(38371270-38371311)
chr4 (1-41)||(39136297-39136338)
chr4 (1-41)||(49869692-49869733)
chr4 (1-40)||(3556187-3556227)
chr4 (2-37)||(4107508-4107544)
chr4 (1-37)||(9695368-9695404)
chr4 (1-41)||(10726209-10726249)
chr4 (1-41)||(10939978-10940018)
chr4 (1-40)||(13019273-13019313)
chr4 (1-40)||(17554319-17554359)
chr4 (1-40)||(19956997-19957037)
chr4 (2-41)||(24542753-24542793)
chr4 (1-40)||(34363091-34363131)
chr4 (10-42)||(36095815-36095847)
chr4 (1-44)||(41205494-41205538)
chr4 (10-42)||(43051276-43051308)
chr4 (1-37)||(47096698-47096734)
[»] chr5 (27 HSPs)
chr5 (1-40)||(15738074-15738114)
chr5 (1-47)||(30894389-30894436)
chr5 (1-42)||(2546645-2546687)
chr5 (1-42)||(2710610-2710652)
chr5 (1-42)||(16597313-16597355)
chr5 (1-42)||(23263143-23263185)
chr5 (1-42)||(28736713-28736755)
chr5 (1-38)||(29401092-29401130)
chr5 (1-42)||(34082374-34082416)
chr5 (1-42)||(34606643-34606685)
chr5 (1-42)||(35306975-35307017)
chr5 (1-42)||(40687664-40687706)
chr5 (1-41)||(3020867-3020908)
chr5 (1-41)||(10331955-10331996)
chr5 (1-41)||(12049390-12049431)
chr5 (1-41)||(13765258-13765299)
chr5 (1-38)||(20040984-20041021)
chr5 (1-41)||(25631085-25631126)
chr5 (1-41)||(31456134-31456175)
chr5 (1-41)||(34734346-34734387)
chr5 (1-41)||(37887671-37887712)
chr5 (1-41)||(40687942-40687983)
chr5 (1-40)||(8339959-8339999)
chr5 (10-42)||(11350806-11350838)
chr5 (1-40)||(26323648-26323688)
chr5 (1-40)||(32555764-32555804)
chr5 (1-40)||(34169061-34169101)
[»] scaffold0182 (1 HSPs)
scaffold0182 (1-42)||(20593-20635)
[»] scaffold0592 (1 HSPs)
scaffold0592 (1-41)||(8983-9024)
[»] scaffold0227 (1 HSPs)
scaffold0227 (1-41)||(762-803)
[»] scaffold0014 (1 HSPs)
scaffold0014 (1-41)||(79260-79301)
[»] scaffold0005 (1 HSPs)
scaffold0005 (1-41)||(238621-238662)
[»] scaffold0001 (1 HSPs)
scaffold0001 (1-48)||(400979-401027)


Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 41 - 317
Target Start/End: Original strand, 19646824 - 19647100
Alignment:
Q  41 ttgtttattatatttattgatccgaaaaaatttgatataatcttttacatagcaaagaattgtttactaatggcaaaccacatctccaatttcttttatt 140  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  19646824 ttgtttattatatttattgatccgaaaaaatttgatataatcttttacatagcaaagaattgtttactaatggcaaaccacatctcaaatttcttttatt 19646923  T
Q  141 tctttgtcatcctagccaccattgccacagtgcaatattcaacagtggaagcaggcacatgcacaagtatattcaatagatgtgatgacataaattgctc 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  19646924 tctttgtcatcctagccaccattgccacagtgcaatattcaacagtggaagcaggcacatgcacaagtatattcaatagatgtgatgacatagattgctc 19647023  T
Q  241 ttcacattgtaaatctgctcatggcacccttggagtaagttggagatgtgatctcttcaacctatgcacttgtactt 317  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19647024 ttcacattgtcaatctgctcatggcacccttggagtaagttggagatgtgatctcttcaacctatgcacttgtactt 19647100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 2239267 - 2239225
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcctt 42  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  2239267 caacttttgaaaagataggggtccaaaaatgcaattaagcctt 2239225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 28097457 - 28097415
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcctt 42  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  28097457 caacttttgaaaagataggggtccaaaaatgcaattaagcctt 28097415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 1589107 - 1589066
Alignment:
Q  1 caacttttgaaaagataggggtcaaaaatgcaattaagcctt 42  Q
    ||||||||||||||||||||||||||||| ||||||| ||||    
T  1589107 caacttttgaaaagataggggtcaaaaatacaattaaacctt 1589066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 787139 - 787099
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcc 40  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  787139 caacttttgaaaagataggggtccaaaaatgcaattaagcc 787099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 25126271 - 25126318
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagccttgttta 47  Q
    |||||||||||||||||||||| ||||| ||||||||||||| |||||    
T  25126271 caacttttgaaaagataggggtccaaaagtgcaattaagcctagttta 25126318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 2118753 - 2118711
Alignment:
Q  1 caacttttgaaaagataggggtc-aaaaatgcaattaagcctt 42  Q
    ||||||||||||||||||||||| |||| ||||||||||||||    
T  2118753 caacttttgaaaagataggggtctaaaagtgcaattaagcctt 2118711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 9153517 - 9153475
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcctt 42  Q
    |||||||||||||||||||||| ||||| ||||||||||||||    
T  9153517 caacttttgaaaagataggggtccaaaagtgcaattaagcctt 9153475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 30761073 - 30761115
Alignment:
Q  1 caacttttgaaaagatagggg-tcaaaaatgcaattaagcctt 42  Q
    ||||||||||||||||||||| |||||| ||||||||||||||    
T  30761073 caacttttgaaaagataggggttcaaaagtgcaattaagcctt 30761115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 32205120 - 32205162
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcctt 42  Q
    |||||||||||||||||||||| ||||| ||||||||||||||    
T  32205120 caacttttgaaaagataggggtccaaaagtgcaattaagcctt 32205162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 33576682 - 33576724
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcctt 42  Q
    |||||||||||||||||||||| ||||| ||||||||||||||    
T  33576682 caacttttgaaaagataggggtccaaaagtgcaattaagcctt 33576724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 36567148 - 36567194
Alignment:
Q  1 caacttttgaaaagatagg-ggtcaaaaatgcaattaagccttgttt 46  Q
    |||||||||||||| |||| || ||||||||||||||||||||||||    
T  36567148 caacttttgaaaagttaggaggccaaaaatgcaattaagccttgttt 36567194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 41223553 - 41223511
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcctt 42  Q
    |||||||||||||||||||||| ||||| ||||||||||||||    
T  41223553 caacttttgaaaagataggggtccaaaagtgcaattaagcctt 41223511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 53531846 - 53531804
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcctt 42  Q
    |||||||||||||||||||||| ||||| ||||||||||||||    
T  53531846 caacttttgaaaagataggggtccaaaagtgcaattaagcctt 53531804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 19914516 - 19914475
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    |||||||||||||||||||||| ||||| |||||||||||||    
T  19914516 caacttttgaaaagataggggtccaaaagtgcaattaagcct 19914475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 21841984 - 21842029
Alignment:
Q  1 caacttttgaaaagataggggtc-aaaaatgcaattaagccttgtt 45  Q
    |||||||||||||||||| |||| |||| |||||||||||||||||    
T  21841984 caacttttgaaaagatagaggtctaaaagtgcaattaagccttgtt 21842029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 31117660 - 31117619
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    |||||||||||||||||||||| ||||| |||||||||||||    
T  31117660 caacttttgaaaagataggggtccaaaagtgcaattaagcct 31117619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 38511930 - 38511971
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    |||||||||||||||||||||| ||||| |||||||||||||    
T  38511930 caacttttgaaaagataggggtccaaaagtgcaattaagcct 38511971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 47943733 - 47943774
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    |||||||||||||||||||||| ||||| |||||||||||||    
T  47943733 caacttttgaaaagataggggtccaaaagtgcaattaagcct 47943774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 2118987 - 2119027
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcc 40  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  2118987 caacttttgaaaagataggggtccaaaagtgcaattaagcc 2119027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 17483601 - 17483561
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcc 40  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  17483601 caacttttgaaaagataggggtccaaaagtgcaattaagcc 17483561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 17483831 - 17483871
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcc 40  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  17483831 caacttttgaaaagataggggtccaaaagtgcaattaagcc 17483871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 90
Target Start/End: Original strand, 19653742 - 19653782
Alignment:
Q  51 tatttattgatccgaaaa-aatttgatataatcttttacat 90  Q
    ||||| |||||||||||| ||||||||||||||||||||||    
T  19653742 tatttcttgatccgaaaaaaatttgatataatcttttacat 19653782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 41282120 - 41282160
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcc 40  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  41282120 caacttttgaaaagataggggtccaaaagtgcaattaagcc 41282160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 41722257 - 41722297
Alignment:
Q  1 caacttttgaaaagatagggg-tcaaaaatgcaattaagcc 40  Q
    ||||||||||||||||||||| |||||| ||||||||||||    
T  41722257 caacttttgaaaagataggggttcaaaagtgcaattaagcc 41722297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 44624500 - 44624540
Alignment:
Q  2 aacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    ||||||||||||||||||||| ||||| |||||||||||||    
T  44624500 aacttttgaaaagataggggtccaaaagtgcaattaagcct 44624540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 45760506 - 45760546
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcc 40  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  45760506 caacttttgaaaagataggggtccaaaagtgcaattaagcc 45760546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 47922363 - 47922399
Alignment:
Q  1 caacttttgaaaagataggggtcaaaaatgcaattaa 37  Q
    |||||||||||||||||||||| |||| |||||||||    
T  47922363 caacttttgaaaagataggggttaaaagtgcaattaa 47922399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 51187961 - 51188001
Alignment:
Q  1 caacttttgaaaagataggggtcaaaaatgcaattaagcct 41  Q
    |||||||| ||||||||| |||||||| |||||||||||||    
T  51187961 caacttttaaaaagatagaggtcaaaagtgcaattaagcct 51188001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 51213347 - 51213307
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcc 40  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  51213347 caacttttgaaaagataggggtccaaaagtgcaattaagcc 51213307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 41
Target Start/End: Complemental strand, 51860369 - 51860333
Alignment:
Q  6 tttgaaaagataggggtc-aaaaatgcaattaagcct 41  Q
    |||||||||||||||||| ||||||||||||||||||    
T  51860369 tttgaaaagataggggtccaaaaatgcaattaagcct 51860333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 53191236 - 53191276
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcc 40  Q
    ||||||||| |||||||||||| ||||||||||||||||||    
T  53191236 caacttttggaaagataggggtccaaaaatgcaattaagcc 53191276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 8e-55; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 169 - 317
Target Start/End: Complemental strand, 18773285 - 18773137
Alignment:
Q  169 agtgcaatattcaacagtggaagcaggcacatgcacaagtatattcaatagatgtgatgacataaattgctcttcacattgtaaatctgctcatggcacc 268  Q
    ||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||| ||||| ||  |||||||||||||||||||||||||    
T  18773285 agtgcaatattcaacggtggacgcaggcaaatgcacaagtatattcaatagatgtgatgacatagattgccctggacattgtaaatctgctcatggcacc 18773186  T
Q  269 cttggagtaagttggagatgtgatctcttcaacctatgcacttgtactt 317  Q
    | |||||||||||||| ||||||||||||| ||||||||||||||||||    
T  18773185 catggagtaagttggaaatgtgatctcttctacctatgcacttgtactt 18773137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 94 - 165
Target Start/End: Complemental strand, 18762674 - 18762603
Alignment:
Q  94 aaagaattgtttactaatggcaaaccacatctccaatttcttttatttctttgtcatcctagccaccattgc 165  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  18762674 aaagaattgtttactaatggcaaaccacatctcaaatttcttttatttctttgtcatcctagccaccattgc 18762603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 94 - 165
Target Start/End: Complemental strand, 18773464 - 18773393
Alignment:
Q  94 aaagaattgtttactaatggcaaaccacatctccaatttcttttatttctttgtcatcctagccaccattgc 165  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  18773464 aaagaattgtttactaatggcaaaccacatctcaaatttcttttatttctttgtcatcctaaccaccattgc 18773393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 19025864 - 19025822
Alignment:
Q  1 caacttttgaaaagataggggtcaaaaa-tgcaattaagcctt 42  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  19025864 caacttttgaaaagataggggtcaaaaagtgcaattaagcctt 19025822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 37334644 - 37334604
Alignment:
Q  1 caacttttgaaaagataggggtcaaaaatgcaattaagcct 41  Q
    ||||||||||||||||||||| ||||| |||||||||||||    
T  37334644 caacttttgaaaagataggggccaaaagtgcaattaagcct 37334604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 1467081 - 1467123
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcctt 42  Q
    |||||||||||||||||||||| ||||| ||||||||||||||    
T  1467081 caacttttgaaaagataggggtccaaaagtgcaattaagcctt 1467123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 24205334 - 24205292
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcctt 42  Q
    |||||||||||||||||||||| ||||| ||||||||||||||    
T  24205334 caacttttgaaaagataggggtccaaaagtgcaattaagcctt 24205292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 31784292 - 31784250
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcctt 42  Q
    |||||||||||||||||||||| ||||| ||||||||||||||    
T  31784292 caacttttgaaaagataggggtccaaaagtgcaattaagcctt 31784250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 34981424 - 34981386
Alignment:
Q  1 caacttttgaaaagataggggtcaaaaatgcaattaagc 39  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  34981424 caacttttgaaaagatagggtccaaaaatgcaattaagc 34981386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 40493918 - 40493960
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcctt 42  Q
    |||||||||||||||||||||| ||||| ||||||||||||||    
T  40493918 caacttttgaaaagataggggtccaaaagtgcaattaagcctt 40493960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 40711376 - 40711334
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcctt 42  Q
    |||||||||||||||||||||| ||||||| ||||||||||||    
T  40711376 caacttttgaaaagataggggtccaaaaatacaattaagcctt 40711334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 40938834 - 40938792
Alignment:
Q  1 caacttttgaaaagatagggg-tcaaaaatgcaattaagcctt 42  Q
    ||||||||||||||||||||| |||||| ||||||||||||||    
T  40938834 caacttttgaaaagatagggggtcaaaagtgcaattaagcctt 40938792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 16238496 - 16238533
Alignment:
Q  1 caacttttgaaaagatagggg-tcaaaaatgcaattaa 37  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  16238496 caacttttgaaaagataggggatcaaaaatgcaattaa 16238533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 19885898 - 19885861
Alignment:
Q  1 caacttttgaaaagataggggtcaaaaatgcaattaag 38  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  19885898 caacttttgaaaagataggggccaaaagtgcaattaag 19885861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 20436098 - 20436057
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    |||||||||||||||||||||| ||||| |||||||||||||    
T  20436098 caacttttgaaaagataggggtccaaaagtgcaattaagcct 20436057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 21024734 - 21024775
Alignment:
Q  1 caacttttgaaaagata-ggggtcaaaaatgcaattaagcct 41  Q
    ||||||||||||||||| |||||||||| |||||||||||||    
T  21024734 caacttttgaaaagatagggggtcaaaagtgcaattaagcct 21024775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 22194488 - 22194447
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    |||||||||||||||||||||| |||||||| ||||||||||    
T  22194488 caacttttgaaaagataggggtccaaaaatgaaattaagcct 22194447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 24895184 - 24895225
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    |||||||||||||||||||||| ||||| |||||||||||||    
T  24895184 caacttttgaaaagataggggtccaaaagtgcaattaagcct 24895225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 31784524 - 31784565
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    |||||||||||||||||||| | |||||||||||||||||||    
T  31784524 caacttttgaaaagatagggatccaaaaatgcaattaagcct 31784565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 33004749 - 33004708
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    |||||||||||||||||||||| ||||| |||||||||||||    
T  33004749 caacttttgaaaagataggggtccaaaagtgcaattaagcct 33004708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 34981655 - 34981692
Alignment:
Q  1 caacttttgaaaagataggggtc-aaaaatgcaattaa 37  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  34981655 caacttttgaaaagataggggtctaaaaatgcaattaa 34981692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 35173087 - 35173124
Alignment:
Q  1 caacttttgaaaagataggggtcaaaaatgcaattaag 38  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  35173087 caacttttgaaaagataggggccaaaagtgcaattaag 35173124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 41072101 - 41072142
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    ||||||||| |||||||||||| |||||||||||||||||||    
T  41072101 caacttttggaaagataggggtccaaaaatgcaattaagcct 41072142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 2638850 - 2638818
Alignment:
Q  10 aaaagataggggtcaaaaatgcaattaagcctt 42  Q
    ||||||||||||| |||||||||||||||||||    
T  2638850 aaaagataggggtgaaaaatgcaattaagcctt 2638818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 18296717 - 18296753
Alignment:
Q  10 aaaagataggggtcaaaaatgcaattaagccttgttt 46  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  18296717 aaaagataggggtgaaaagtgcaattaagccttgttt 18296753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 21552581 - 21552541
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcc 40  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  21552581 caacttttgaaaagataggggtccaaaagtgcaattaagcc 21552541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 22194721 - 22194761
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcc 40  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  22194721 caacttttgaaaagataggggtccaaaagtgcaattaagcc 22194761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 38731319 - 38731279
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcc 40  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  38731319 caacttttgaaaagataggggtccaaaagtgcaattaagcc 38731279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 39642769 - 39642729
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcc 40  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  39642769 caacttttgaaaagataggggtccaaaagtgcaattaagcc 39642729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 41)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 36624184 - 36624225
Alignment:
Q  1 caacttttgaaaagataggggtcaaaaatgcaattaagcctt 42  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  36624184 caacttttgaaaagataggggccaaaaatgcaattaagcctt 36624225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 29197338 - 29197298
Alignment:
Q  1 caacttttgaaaagataggggtcaaaaatgcaattaagcct 41  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  29197338 caacttttgaaaagataggggtcaaaagtgcaattaagcct 29197298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 38701933 - 38701973
Alignment:
Q  1 caacttttgaaaagataggggtcaaaaatgcaattaagcct 41  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  38701933 caacttttgaaaagataggggtcaaaagtgcaattaagcct 38701973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 5734224 - 5734182
Alignment:
Q  1 caacttttgaaaagatagggg-tcaaaaatgcaattaagcctt 42  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  5734224 caacttttgaaaagataggggttcaaaaatgcaattaagcctt 5734182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 7150882 - 7150840
Alignment:
Q  1 caacttttgaaaagatagggg-tcaaaaatgcaattaagcctt 42  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  7150882 caacttttgaaaagataggggttcaaaaatgcaattaagcctt 7150840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 4146825 - 4146784
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  4146825 caacttttgaaaagataggggtccaaaaatgcaattaagcct 4146784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 37205580 - 37205539
Alignment:
Q  1 caacttttgaaaagatagggg-tcaaaaatgcaattaagcct 41  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  37205580 caacttttgaaaagataggggttcaaaaatgcaattaagcct 37205539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 2321556 - 2321514
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcctt 42  Q
    |||||||||||||||||||||| ||||| ||||||||||||||    
T  2321556 caacttttgaaaagataggggtccaaaagtgcaattaagcctt 2321514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 6745267 - 6745309
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcctt 42  Q
    |||||||||||||||||||||| ||||| ||||||||||||||    
T  6745267 caacttttgaaaagataggggtccaaaagtgcaattaagcctt 6745309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 8870534 - 8870576
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcctt 42  Q
    ||||||||| |||||||||||| ||||||||||||||||||||    
T  8870534 caacttttggaaagataggggttcaaaaatgcaattaagcctt 8870576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 17943398 - 17943356
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcctt 42  Q
    |||||||||||||||||||||| ||||| ||||||||||||||    
T  17943398 caacttttgaaaagataggggtccaaaagtgcaattaagcctt 17943356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 18530872 - 18530830
Alignment:
Q  1 caacttttgaaaagatagggg-tcaaaaatgcaattaagcctt 42  Q
    ||||||||||||||||||||| |||||| ||||||||||||||    
T  18530872 caacttttgaaaagataggggttcaaaagtgcaattaagcctt 18530830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 23234053 - 23234095
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcctt 42  Q
    |||||||||||||||||||||| ||||| ||||||||||||||    
T  23234053 caacttttgaaaagataggggtccaaaagtgcaattaagcctt 23234095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 37639547 - 37639505
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcctt 42  Q
    |||||||||||||||||||||| ||||| ||||||||||||||    
T  37639547 caacttttgaaaagataggggtccaaaagtgcaattaagcctt 37639505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 41206405 - 41206447
Alignment:
Q  1 caacttttgaaaagatagggg-tcaaaaatgcaattaagcctt 42  Q
    ||||||||||||||||||||| |||||| ||||||||||||||    
T  41206405 caacttttgaaaagataggggttcaaaagtgcaattaagcctt 41206447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 44807348 - 44807390
Alignment:
Q  1 caacttttgaaaagata-ggggtcaaaaatgcaattaagcctt 42  Q
    ||||||||||||||||| |||||||||| ||||||||||||||    
T  44807348 caacttttgaaaagatagggggtcaaaagtgcaattaagcctt 44807390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 414928 - 414969
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    |||||||||||||||||||||| ||||| |||||||||||||    
T  414928 caacttttgaaaagataggggtccaaaagtgcaattaagcct 414969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 6014459 - 6014418
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    |||||||||||||||||||||| ||||| |||||||||||||    
T  6014459 caacttttgaaaagataggggtccaaaagtgcaattaagcct 6014418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 6335601 - 6335642
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    |||||||||||||||||||||| ||||| |||||||||||||    
T  6335601 caacttttgaaaagataggggtccaaaagtgcaattaagcct 6335642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 7658642 - 7658601
Alignment:
Q  1 caacttttgaaaagata-ggggtcaaaaatgcaattaagcct 41  Q
    ||||||||||||||||| |||||||||| |||||||||||||    
T  7658642 caacttttgaaaagatagggggtcaaaagtgcaattaagcct 7658601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 15187968 - 15187927
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    |||||||||||||||||||||| ||||| |||||||||||||    
T  15187968 caacttttgaaaagataggggtccaaaagtgcaattaagcct 15187927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 16531522 - 16531563
Alignment:
Q  1 caacttttgaaaagataggggtc-aaaaatgcaattaagcct 41  Q
    ||||||||||||||||||||||| |||| |||||||||||||    
T  16531522 caacttttgaaaagataggggtctaaaagtgcaattaagcct 16531563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 33687760 - 33687801
Alignment:
Q  1 caacttttgaaaagata-ggggtcaaaaatgcaattaagcct 41  Q
    ||||||||||||||||| |||||||||| |||||||||||||    
T  33687760 caacttttgaaaagataaggggtcaaaagtgcaattaagcct 33687801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 36623944 - 36623903
Alignment:
Q  1 caacttttgaaaagataggggtcaaaaatgcaattaagcctt 42  Q
    ||||||||||| ||||||| ||||||| ||||||||||||||    
T  36623944 caacttttgaagagataggagtcaaaagtgcaattaagcctt 36623903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 37953414 - 37953373
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    |||||||||||||||||||||| ||||| |||||||||||||    
T  37953414 caacttttgaaaagataggggtccaaaagtgcaattaagcct 37953373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 42267496 - 42267455
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    |||||||||||||||||||||| ||||| |||||||||||||    
T  42267496 caacttttgaaaagataggggtccaaaagtgcaattaagcct 42267455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 42930891 - 42930928
Alignment:
Q  1 caacttttgaaaagataggggtcaaaaa-tgcaattaa 37  Q
    |||||||||||||||||||||||||||| |||||||||    
T  42930891 caacttttgaaaagataggggtcaaaaagtgcaattaa 42930928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 45106475 - 45106434
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    |||||||||||||||||||||| ||||| |||||||||||||    
T  45106475 caacttttgaaaagataggggtccaaaagtgcaattaagcct 45106434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 45516193 - 45516234
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    ||||||||||||||||||| || |||||||||||||||||||    
T  45516193 caacttttgaaaagataggagtccaaaaatgcaattaagcct 45516234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 4107121 - 4107161
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcc 40  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  4107121 caacttttgaaaagataggggtccaaaagtgcaattaagcc 4107161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 4167473 - 4167513
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcc 40  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  4167473 caacttttgaaaagataggggtccaaaagtgcaattaagcc 4167513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 6641871 - 6641911
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcc 40  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  6641871 caacttttgaaaagataggggtccaaaagtgcaattaagcc 6641911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 9823385 - 9823421
Alignment:
Q  10 aaaagataggggtcaaaaatgcaattaagccttgttt 46  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  9823385 aaaagataggggtgaaaagtgcaattaagccttgttt 9823421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 10285142 - 10285102
Alignment:
Q  1 caacttttgaaaagataggggtcaaaaatgcaattaagcct 41  Q
    ||||||||  ||||||||||| |||||||||||||||||||    
T  10285142 caacttttagaaagataggggccaaaaatgcaattaagcct 10285102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 14024313 - 14024353
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcc 40  Q
    ||||||||| |||||||||||| ||||||||||||||||||    
T  14024313 caacttttggaaagataggggtccaaaaatgcaattaagcc 14024353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 16531288 - 16531248
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcc 40  Q
    |||||||||||||||||||||| ||||||| ||||||||||    
T  16531288 caacttttgaaaagataggggtccaaaaatacaattaagcc 16531248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 23233821 - 23233781
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcc 40  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  23233821 caacttttgaaaagataggggtccaaaagtgcaattaagcc 23233781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 23623461 - 23623421
Alignment:
Q  1 caacttttgaaaagata-ggggtcaaaaatgcaattaagcc 40  Q
    ||||||||||||||||| |||||||||| ||||||||||||    
T  23623461 caacttttgaaaagatatggggtcaaaagtgcaattaagcc 23623421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 27339816 - 27339856
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcc 40  Q
    |||||||| ||||||||||||| ||||||||||||||||||    
T  27339816 caacttttaaaaagataggggtccaaaaatgcaattaagcc 27339856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 34608652 - 34608692
Alignment:
Q  1 caacttttgaaaagataggggtcaaaaatgcaattaagcct 41  Q
    |||||||| |||||||| ||||||||| |||||||||||||    
T  34608652 caacttttaaaaagatatgggtcaaaagtgcaattaagcct 34608692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 42866366 - 42866406
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcc 40  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  42866366 caacttttgaaaagataggggtccaaaagtgcaattaagcc 42866406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 43)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 26932622 - 26932581
Alignment:
Q  1 caacttttgaaaagataggggtcaaaaatgcaattaagcctt 42  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  26932622 caacttttgaaaagataggggtcaaaagtgcaattaagcctt 26932581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 14780 - 14738
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcctt 42  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  14780 caacttttgaaaagataggggtccaaaaatgcaattaagcctt 14738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 7598879 - 7598921
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcctt 42  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  7598879 caacttttgaaaagataggggtccaaaaatgcaattaagcctt 7598921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 16491014 - 16490973
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  16491014 caacttttgaaaagataggggtccaaaaatgcaattaagcct 16490973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 44846958 - 44846917
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  44846958 caacttttgaaaagataggggtccaaaaatgcaattaagcct 44846917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 52201405 - 52201364
Alignment:
Q  1 caacttttgaaaagataggggtcaaaaatgcaattaagcctt 42  Q
    ||||||||||||||||||||| ||||| ||||||||||||||    
T  52201405 caacttttgaaaagataggggccaaaagtgcaattaagcctt 52201364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 21697147 - 21697187
Alignment:
Q  1 caacttttgaaaagataggggtcaaaaatgcaattaagcct 41  Q
    ||||||||||||||||||||||||||| ||||||| |||||    
T  21697147 caacttttgaaaagataggggtcaaaagtgcaattgagcct 21697187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 51195957 - 51196001
Alignment:
Q  5 ttttgaaaagataggggtcaaaaatgcaattaagccttgtttatt 49  Q
    ||||||||||||||||| ||||||||||||||||| || ||||||    
T  51195957 ttttgaaaagataggggccaaaaatgcaattaagctttttttatt 51196001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 15015 - 15054
Alignment:
Q  3 acttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  15015 acttttgaaaagataggggtccaaaaatgcaattaagcct 15054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 6912256 - 6912217
Alignment:
Q  1 caacttttgaaaagataggggtcaaaaatgcaattaagcc 40  Q
    ||||||||||||||||||||| ||||| ||||||||||||    
T  6912256 caacttttgaaaagataggggccaaaagtgcaattaagcc 6912217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 1712410 - 1712368
Alignment:
Q  1 caacttttgaaaagatagggg-tcaaaaatgcaattaagcctt 42  Q
    ||||||||||||||||||||| |||||| ||||||||||||||    
T  1712410 caacttttgaaaagatagggggtcaaaagtgcaattaagcctt 1712368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 8770503 - 8770461
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcctt 42  Q
    |||||||||||||||||||||| ||||| ||||||||||||||    
T  8770503 caacttttgaaaagataggggtccaaaagtgcaattaagcctt 8770461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 11018675 - 11018717
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcctt 42  Q
    |||||||||||||||||||||| ||||| ||||||||||||||    
T  11018675 caacttttgaaaagataggggtccaaaagtgcaattaagcctt 11018717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 15911712 - 15911666
Alignment:
Q  1 caacttttgaaaagataggggtcaaaaa-tgcaattaagccttgttt 46  Q
    ||||||||||||||||||||| | |||| ||||||||||||||||||    
T  15911712 caacttttgaaaagatagggggccaaaagtgcaattaagccttgttt 15911666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 23342234 - 23342280
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagccttgttt 46  Q
    ||||||||| |||||||||||| ||||| ||||||||||||||||||    
T  23342234 caacttttggaaagataggggtccaaaagtgcaattaagccttgttt 23342280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 32341765 - 32341807
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcctt 42  Q
    |||||||||||||||||||||| ||||| ||||||||||||||    
T  32341765 caacttttgaaaagataggggtccaaaagtgcaattaagcctt 32341807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 39427451 - 39427409
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcctt 42  Q
    |||||||||||||||||||||| ||||| ||||||||||||||    
T  39427451 caacttttgaaaagataggggtccaaaagtgcaattaagcctt 39427409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 42406923 - 42406881
Alignment:
Q  1 caacttttgaaaagatagggg-tcaaaaatgcaattaagcctt 42  Q
    ||||||||||||||||||||| |||||| ||||||||||||||    
T  42406923 caacttttgaaaagataggggttcaaaagtgcaattaagcctt 42406881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 49227160 - 49227118
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcctt 42  Q
    |||||||||||||||||||||| ||||||||||||||| ||||    
T  49227160 caacttttgaaaagataggggtccaaaaatgcaattaaacctt 49227118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 52143438 - 52143480
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcctt 42  Q
    |||||||||||||||||||||| ||||| ||||||||||||||    
T  52143438 caacttttgaaaagataggggtccaaaagtgcaattaagcctt 52143480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 6606575 - 6606534
Alignment:
Q  1 caacttttgaaaagataggggtcaaaaatgcaattaagcctt 42  Q
    ||||||||||||||||||||| ||||| | ||||||||||||    
T  6606575 caacttttgaaaagatagggggcaaaagtacaattaagcctt 6606534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 6809342 - 6809379
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaa 37  Q
    |||||||||||||||||||||| |||||||||||||||    
T  6809342 caacttttgaaaagataggggtccaaaaatgcaattaa 6809379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 20471685 - 20471726
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    ||||||||| |||||||||||| |||||||||||||||||||    
T  20471685 caacttttggaaagataggggttcaaaaatgcaattaagcct 20471726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 20559852 - 20559811
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    ||||||||| |||||||||||| |||||||||||||||||||    
T  20559852 caacttttggaaagataggggttcaaaaatgcaattaagcct 20559811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 22071203 - 22071166
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaa 37  Q
    |||||||||||||||||||||| |||||||||||||||    
T  22071203 caacttttgaaaagataggggtccaaaaatgcaattaa 22071166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 22204345 - 22204304
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    |||||||||||||||||||||| ||||| |||||||||||||    
T  22204345 caacttttgaaaagataggggtccaaaagtgcaattaagcct 22204304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 23342004 - 23341963
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    |||||||||||||||||||||| ||||| |||||||||||||    
T  23342004 caacttttgaaaagataggggtccaaaagtgcaattaagcct 23341963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 26811493 - 26811452
Alignment:
Q  1 caacttttgaaaagata-ggggtcaaaaatgcaattaagcct 41  Q
    ||||||||||||||||| |||||||||| |||||||||||||    
T  26811493 caacttttgaaaagatagggggtcaaaagtgcaattaagcct 26811452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 33811698 - 33811739
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    ||||||||| |||||||||||| |||||||||||||||||||    
T  33811698 caacttttggaaagataggggtccaaaaatgcaattaagcct 33811739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 33871168 - 33871209
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    ||||||||| |||||||||||| |||||||||||||||||||    
T  33871168 caacttttggaaagataggggtccaaaaatgcaattaagcct 33871209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 37028968 - 37028927
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    |||||||||||||||||||||| ||||| |||||||||||||    
T  37028968 caacttttgaaaagataggggtccaaaagtgcaattaagcct 37028927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 39427686 - 39427727
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    ||||||||| |||||||||||| |||||||||||||||||||    
T  39427686 caacttttggaaagataggggtccaaaaatgcaattaagcct 39427727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 43914853 - 43914894
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    |||||||||||||||||||||| ||||| |||||||||||||    
T  43914853 caacttttgaaaagataggggtccaaaagtgcaattaagcct 43914894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 45884988 - 45884947
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    |||||||||||||||||||||| ||||| |||||||||||||    
T  45884988 caacttttgaaaagataggggtccaaaagtgcaattaagcct 45884947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 6183255 - 6183295
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcc 40  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  6183255 caacttttgaaaagataggggtccaaaagtgcaattaagcc 6183295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 6491689 - 6491729
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcc 40  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  6491689 caacttttgaaaagataggggtccaaaagtgcaattaagcc 6491729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 12690061 - 12690013
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagccttgtttat 48  Q
    ||||||||| |||||||||||| ||||| |||||||||||||| |||||    
T  12690061 caacttttggaaagataggggtccaaaagtgcaattaagccttttttat 12690013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 13791848 - 13791888
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcc 40  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  13791848 caacttttgaaaagataggggtccaaaagtgcaattaagcc 13791888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 21932061 - 21932101
Alignment:
Q  1 caacttttgaaaagataggggtcaaaaa-tgcaattaagcc 40  Q
    ||||||||||||||||||||| |||||| ||||||||||||    
T  21932061 caacttttgaaaagatagggggcaaaaagtgcaattaagcc 21932101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 22075624 - 22075664
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcc 40  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  22075624 caacttttgaaaagataggggtccaaaagtgcaattaagcc 22075664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 27855603 - 27855563
Alignment:
Q  1 caacttttgaaaagatagggg-tcaaaaatgcaattaagcc 40  Q
    ||||||||||||||||||||| |||||| ||||||||||||    
T  27855603 caacttttgaaaagataggggttcaaaagtgcaattaagcc 27855563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 38622676 - 38622716
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcc 40  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  38622676 caacttttgaaaagataggggtccaaaagtgcaattaagcc 38622716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 52149787 - 52149827
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcc 40  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  52149787 caacttttgaaaagataggggtccaaaagtgcaattaagcc 52149827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 37858326 - 37858366
Alignment:
Q  1 caacttttgaaaagataggggtcaaaaatgcaattaagcct 41  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  37858326 caacttttgaaaagataggggtcaaaagtgcaattaagcct 37858366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 45863062 - 45863022
Alignment:
Q  1 caacttttgaaaagataggggtcaaaaatgcaattaagcct 41  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  45863062 caacttttgaaaagataggggtcaaaagtgcaattaagcct 45863022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 17802181 - 17802220
Alignment:
Q  1 caacttttgaaaagataggggtcaaaaatgcaattaagcc 40  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  17802181 caacttttgaaaagataggggtcaaaagtgcaattaagcc 17802220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 10350846 - 10350804
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcctt 42  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  10350846 caacttttgaaaagataggggtccaaaaatgcaattaagcctt 10350804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 23740304 - 23740262
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcctt 42  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  23740304 caacttttgaaaagataggggtccaaaaatgcaattaagcctt 23740262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 16879275 - 16879234
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  16879275 caacttttgaaaagataggggtccaaaaatgcaattaagcct 16879234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 17167894 - 17167853
Alignment:
Q  1 caacttttgaaaagataggggtcaaaaatgcaattaagcctt 42  Q
    ||||||||||||||||||||| ||||| ||||||||||||||    
T  17167894 caacttttgaaaagataggggccaaaagtgcaattaagcctt 17167853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 38882410 - 38882369
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  38882410 caacttttgaaaagataggggtacaaaaatgcaattaagcct 38882369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 42997325 - 42997365
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcc 40  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  42997325 caacttttgaaaagataggggtccaaaaatgcaattaagcc 42997365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 10318931 - 10318880
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagccttgtttattat 51  Q
    |||||||||||||||||||||| ||||| |||||||||||||| ||| ||||    
T  10318931 caacttttgaaaagataggggtccaaaagtgcaattaagcctttttttttat 10318880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 3925833 - 3925791
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcctt 42  Q
    |||||||||||||||||||||| ||||| ||||||||||||||    
T  3925833 caacttttgaaaagataggggtccaaaagtgcaattaagcctt 3925791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 18852535 - 18852493
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcctt 42  Q
    |||||||||||||||||||||| ||||| ||||||||||||||    
T  18852535 caacttttgaaaagataggggtccaaaagtgcaattaagcctt 18852493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 23909935 - 23909893
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcctt 42  Q
    |||||||||||||||||||||| ||||| ||||||||||||||    
T  23909935 caacttttgaaaagataggggtccaaaagtgcaattaagcctt 23909893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 29163140 - 29163098
Alignment:
Q  1 caacttttgaaaagataggggtcaaaaa-tgcaattaagcctt 42  Q
    ||||||||||||||||||||| |||||| ||||||||||||||    
T  29163140 caacttttgaaaagatagggggcaaaaagtgcaattaagcctt 29163098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 34533486 - 34533528
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcctt 42  Q
    |||||||||||||||||||||| ||||| ||||||||||||||    
T  34533486 caacttttgaaaagataggggtccaaaagtgcaattaagcctt 34533528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 43408477 - 43408519
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcctt 42  Q
    |||||||||||||||||||||| ||||| ||||||||||||||    
T  43408477 caacttttgaaaagataggggtccaaaagtgcaattaagcctt 43408519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 930981 - 931022
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    |||||||||||||||||||||| ||||| |||||||||||||    
T  930981 caacttttgaaaagataggggtccaaaagtgcaattaagcct 931022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 7195496 - 7195459
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaa 37  Q
    |||||||||||||||||||||| |||||||||||||||    
T  7195496 caacttttgaaaagataggggtccaaaaatgcaattaa 7195459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 9629289 - 9629330
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    ||||||||| |||||||||||| |||||||||||||||||||    
T  9629289 caacttttggaaagataggggtccaaaaatgcaattaagcct 9629330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 19778527 - 19778568
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    |||||||||||||||||||||| ||||| |||||||||||||    
T  19778527 caacttttgaaaagataggggtccaaaagtgcaattaagcct 19778568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 21917523 - 21917564
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    |||||||||||||||||||||| ||||| |||||||||||||    
T  21917523 caacttttgaaaagataggggtccaaaagtgcaattaagcct 21917564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 25986965 - 25986924
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    |||||||||||||||||||||| ||||| |||||||||||||    
T  25986965 caacttttgaaaagataggggtccaaaagtgcaattaagcct 25986924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 30140960 - 30140919
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    ||||||||| |||||||||||| |||||||||||||||||||    
T  30140960 caacttttggaaagataggggtccaaaaatgcaattaagcct 30140919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 35121686 - 35121727
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    |||||||||||||||||||||| ||||| |||||||||||||    
T  35121686 caacttttgaaaagataggggtccaaaagtgcaattaagcct 35121727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 36204035 - 36203994
Alignment:
Q  1 caacttttgaaaagataggggtcaaaaatgcaattaagcctt 42  Q
    ||||||||  ||||||||||||||||| ||||||||||||||    
T  36204035 caacttttagaaagataggggtcaaaagtgcaattaagcctt 36203994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 37452322 - 37452363
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    |||||||||||||||||||||| ||||| |||||||||||||    
T  37452322 caacttttgaaaagataggggtccaaaagtgcaattaagcct 37452363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 47259003 - 47258962
Alignment:
Q  1 caacttttgaaaagatag-gggtcaaaaatgcaattaagcct 41  Q
    |||||||||||||||||| ||| |||||||||||||||||||    
T  47259003 caacttttgaaaagatagagggccaaaaatgcaattaagcct 47258962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 388174 - 388214
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcc 40  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  388174 caacttttgaaaagataggggtccaaaagtgcaattaagcc 388214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 4061261 - 4061301
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcc 40  Q
    ||||||||| |||||||||||| ||||||||||||||||||    
T  4061261 caacttttggaaagataggggtccaaaaatgcaattaagcc 4061301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 8409133 - 8409093
Alignment:
Q  1 caacttttgaaaagataggg-gtcaaaaatgcaattaagcc 40  Q
    |||||||||||||||||||| ||||||| ||||||||||||    
T  8409133 caacttttgaaaagatagggtgtcaaaagtgcaattaagcc 8409093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 10319166 - 10319206
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcc 40  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  10319166 caacttttgaaaagataggggtccaaaagtgcaattaagcc 10319206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 26612616 - 26612656
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcc 40  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  26612616 caacttttgaaaagataggggtccaaaagtgcaattaagcc 26612656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 30699297 - 30699337
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcc 40  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  30699297 caacttttgaaaagataggggtccaaaagtgcaattaagcc 30699337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 38445679 - 38445719
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcc 40  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  38445679 caacttttgaaaagataggggtccaaaagtgcaattaagcc 38445719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 40790944 - 40790984
Alignment:
Q  1 caacttttgaaaagataggggtcaaaaatgcaattaagcct 41  Q
    ||||||||| ||||||||||| ||||| |||||||||||||    
T  40790944 caacttttggaaagataggggccaaaagtgcaattaagcct 40790984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2010 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold2010
Description:

Target: scaffold2010; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 533 - 479
Alignment:
Q  1 caacttttgaaaagatagggg-tcaaaaatgcaattaagccttgtttattatatt 54  Q
    ||||||||||||||||||||| |||||| |||||||||||||| ||| |||||||    
T  533 caacttttgaaaagatagggggtcaaaagtgcaattaagcctttttttttatatt 479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 11277666 - 11277624
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcctt 42  Q
    |||||||||||||||||||||| ||||||||||||||||||||    
T  11277666 caacttttgaaaagataggggtccaaaaatgcaattaagcctt 11277624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 1897152 - 1897197
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagccttgtt 45  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||    
T  1897152 caacttttggaaagataggggttcaaaaatgcaattaagccttgtt 1897197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 9952188 - 9952227
Alignment:
Q  1 caacttttgaaaagataggggtcaaaaatgcaattaagcc 40  Q
    |||||||| |||||||||||||||||| ||||||||||||    
T  9952188 caacttttaaaaagataggggtcaaaagtgcaattaagcc 9952227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 2565118 - 2565076
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcctt 42  Q
    |||||||||||||||||||||| ||||| ||||||||||||||    
T  2565118 caacttttgaaaagataggggtccaaaagtgcaattaagcctt 2565076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 2565352 - 2565394
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcctt 42  Q
    |||||||||||||||||||||| ||||| ||||||||||||||    
T  2565352 caacttttgaaaagataggggtccaaaagtgcaattaagcctt 2565394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 31740809 - 31740767
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcctt 42  Q
    |||||||||||||||||||||| ||||| ||||||||||||||    
T  31740809 caacttttgaaaagataggggtccaaaagtgcaattaagcctt 31740767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 34705416 - 34705374
Alignment:
Q  1 caacttttgaaaagataggggtc-aaaaatgcaattaagcctt 42  Q
    ||||||||||||| ||||||||| |||||||||||||||||||    
T  34705416 caacttttgaaaatataggggtccaaaaatgcaattaagcctt 34705374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 378512 - 378553
Alignment:
Q  1 caacttttgaaaagataggggtcaaaaatgcaattaagcctt 42  Q
    |||| |||| ||||||||||||||||| ||||||||||||||    
T  378512 caacatttggaaagataggggtcaaaagtgcaattaagcctt 378553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 2100654 - 2100695
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    |||||||||||||||||||||| ||||| |||||||||||||    
T  2100654 caacttttgaaaagataggggtccaaaagtgcaattaagcct 2100695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 10977931 - 10977968
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaa 37  Q
    |||||||||||||||||||||| |||||||||||||||    
T  10977931 caacttttgaaaagataggggtccaaaaatgcaattaa 10977968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 11109007 - 11109048
Alignment:
Q  1 caacttttgaaaagata-ggggtcaaaaatgcaattaagcct 41  Q
    ||||||||||||||||| |||||||||| |||||||||||||    
T  11109007 caacttttgaaaagataaggggtcaaaagtgcaattaagcct 11109048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 11322298 - 11322339
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    |||||||||||||||||||||| ||||| |||||||||||||    
T  11322298 caacttttgaaaagataggggtccaaaagtgcaattaagcct 11322339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 14997049 - 14997008
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    ||||||||| |||||||||||| |||||||||||||||||||    
T  14997049 caacttttggaaagataggggtccaaaaatgcaattaagcct 14997008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 29696888 - 29696847
Alignment:
Q  1 caacttttgaaaagataggggtc-aaaaatgcaattaagcct 41  Q
    ||||||||||||||||||||||| |||| |||||||||||||    
T  29696888 caacttttgaaaagataggggtctaaaagtgcaattaagcct 29696847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 30965731 - 30965690
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    |||||||||||||||||||||| ||||| |||||||||||||    
T  30965731 caacttttgaaaagataggggtccaaaagtgcaattaagcct 30965690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 1815016 - 1814976
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcc 40  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  1815016 caacttttgaaaagataggggtccaaaagtgcaattaagcc 1814976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 8160639 - 8160599
Alignment:
Q  1 caacttttgaaaagatagggg-tcaaaaatgcaattaagcc 40  Q
    ||||||||||||||||||||| |||||| ||||||||||||    
T  8160639 caacttttgaaaagataggggatcaaaagtgcaattaagcc 8160599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 10977698 - 10977658
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcc 40  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  10977698 caacttttgaaaagataggggtccaaaagtgcaattaagcc 10977658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 11746252 - 11746292
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcc 40  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  11746252 caacttttgaaaagataggggtccaaaagtgcaattaagcc 11746292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 20080158 - 20080110
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagccttgtttat 48  Q
    ||||||||| |||||||||||| ||||| |||||||||||||| |||||    
T  20080158 caacttttggaaagataggggtccaaaagtgcaattaagccttatttat 20080110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 28930737 - 28930777
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcc 40  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  28930737 caacttttgaaaagataggggtccaaaagtgcaattaagcc 28930777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 32591876 - 32591916
Alignment:
Q  1 caacttttgaaaagata-ggggtcaaaaatgcaattaagcc 40  Q
    ||||||||||||||||| |||||||||| ||||||||||||    
T  32591876 caacttttgaaaagatagggggtcaaaagtgcaattaagcc 32591916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0272 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 10834 - 10875
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  10834 caacttttgaaaagataggggtccaaaaatgcaattaagcct 10875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0272; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 21122 - 21164
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcctt 42  Q
    ||||||||| |||||||||||| ||||||||||||||||||||    
T  21122 caacttttggaaagataggggtccaaaaatgcaattaagcctt 21164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 63337 - 63378
Alignment:
Q  1 caacttttgaaaagataggggtcaaaaatgcaattaagcctt 42  Q
    ||||||||||||| ||||||||||||| ||||||||||||||    
T  63337 caacttttgaaaaaataggggtcaaaagtgcaattaagcctt 63378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 39332359 - 39332318
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  39332359 caacttttgaaaagataggggtccaaaaatgcaattaagcct 39332318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 54606927 - 54606886
Alignment:
Q  1 caacttttgaaaagataggggtcaaaaatgcaattaagcctt 42  Q
    ||||||||||||||||||||||| ||||| ||||||||||||    
T  54606927 caacttttgaaaagataggggtccaaaatacaattaagcctt 54606886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 52
Target Start/End: Complemental strand, 35835812 - 35835764
Alignment:
Q  5 ttttgaaaagataggggtcaaaaa-tgcaattaagccttgtttattata 52  Q
    ||||||||||||||||||| |||| |||||||||||||||||| |||||    
T  35835812 ttttgaaaagataggggtccaaaagtgcaattaagccttgttttttata 35835764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 48277956 - 48277916
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcc 40  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  48277956 caacttttgaaaagataggggtccaaaaatgcaattaagcc 48277916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 5344310 - 5344268
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcctt 42  Q
    |||||||||||||||||||||| ||||| ||||||||||||||    
T  5344310 caacttttgaaaagataggggtccaaaagtgcaattaagcctt 5344268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 11530033 - 11530075
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcctt 42  Q
    |||||||||||||||||||||| ||||| ||||||||||||||    
T  11530033 caacttttgaaaagataggggtccaaaagtgcaattaagcctt 11530075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 12640860 - 12640818
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcctt 42  Q
    |||||||||||||||||||||| ||||| ||||||||||||||    
T  12640860 caacttttgaaaagataggggtccaaaagtgcaattaagcctt 12640818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 24296773 - 24296815
Alignment:
Q  1 caacttttgaaaagatagg-ggtcaaaaatgcaattaagcctt 42  Q
    ||||||||||||||||||| |||||||| ||||||||||||||    
T  24296773 caacttttgaaaagataggaggtcaaaagtgcaattaagcctt 24296815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 34362860 - 34362818
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcctt 42  Q
    |||||||||||||||||||||| ||||| ||||||||||||||    
T  34362860 caacttttgaaaagataggggtccaaaagtgcaattaagcctt 34362818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 44921883 - 44921925
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcctt 42  Q
    |||||||||||||||||||||| ||||| ||||||||||||||    
T  44921883 caacttttgaaaagataggggtccaaaagtgcaattaagcctt 44921925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 45289773 - 45289815
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcctt 42  Q
    |||||||||||||||||||||| ||||| ||||||||||||||    
T  45289773 caacttttgaaaagataggggtccaaaagtgcaattaagcctt 45289815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 46282800 - 46282758
Alignment:
Q  1 caacttttgaaaagatagggg-tcaaaaatgcaattaagcctt 42  Q
    ||||||||||||||||||||| |||||| ||||||||||||||    
T  46282800 caacttttgaaaagataggggttcaaaagtgcaattaagcctt 46282758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 47854016 - 47853974
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcctt 42  Q
    |||||||||||||||||||||| ||||| ||||||||||||||    
T  47854016 caacttttgaaaagataggggtccaaaagtgcaattaagcctt 47853974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 232964 - 233005
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    |||||||||||||||||||||| ||||| |||||||||||||    
T  232964 caacttttgaaaagataggggtccaaaagtgcaattaagcct 233005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 7644497 - 7644456
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    |||||||||||||||||||||| ||||| |||||||||||||    
T  7644497 caacttttgaaaagataggggtccaaaagtgcaattaagcct 7644456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 10046209 - 10046250
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    |||||||||||||||||||||| ||||| |||||||||||||    
T  10046209 caacttttgaaaagataggggtccaaaagtgcaattaagcct 10046250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 13607957 - 13607916
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    ||||||||| |||||||||||| |||||||||||||||||||    
T  13607957 caacttttggaaagataggggtccaaaaatgcaattaagcct 13607916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 14578713 - 14578754
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    |||||||||||||||||||||| ||||| |||||||||||||    
T  14578713 caacttttgaaaagataggggtccaaaagtgcaattaagcct 14578754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 18988219 - 18988178
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    |||||||||||||||||||||| ||||| |||||||||||||    
T  18988219 caacttttgaaaagataggggtccaaaagtgcaattaagcct 18988178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 21537150 - 21537191
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    |||||||||||||||||||||| ||||| |||||||||||||    
T  21537150 caacttttgaaaagataggggtccaaaagtgcaattaagcct 21537191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 26675093 - 26675052
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    ||||||||| |||||||||||| |||||||||||||||||||    
T  26675093 caacttttggaaagataggggtccaaaaatgcaattaagcct 26675052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 31250742 - 31250783
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    |||||||||||||||||||||| ||||| |||||||||||||    
T  31250742 caacttttgaaaagataggggtccaaaagtgcaattaagcct 31250783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 38371311 - 38371270
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    |||||||||||||||||||||| ||||| |||||||||||||    
T  38371311 caacttttgaaaagataggggtccaaaagtgcaattaagcct 38371270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 39136338 - 39136297
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    |||||||||||||||||||||| ||||| |||||||||||||    
T  39136338 caacttttgaaaagataggggtccaaaagtgcaattaagcct 39136297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 49869692 - 49869733
Alignment:
Q  1 caacttttgaaaagatagg-ggtcaaaaatgcaattaagcct 41  Q
    ||||||||||||||||||| |||||||| |||||||||||||    
T  49869692 caacttttgaaaagataggaggtcaaaagtgcaattaagcct 49869733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 3556187 - 3556227
Alignment:
Q  1 caacttttgaaaagata-ggggtcaaaaatgcaattaagcc 40  Q
    ||||||||||||||||| |||| ||||||||||||||||||    
T  3556187 caacttttgaaaagatagggggccaaaaatgcaattaagcc 3556227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 37
Target Start/End: Complemental strand, 4107544 - 4107508
Alignment:
Q  2 aacttttgaaaagataggggt-caaaaatgcaattaa 37  Q
    ||||||||||||||||||||| |||||||||||||||    
T  4107544 aacttttgaaaagataggggtccaaaaatgcaattaa 4107508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 9695368 - 9695404
Alignment:
Q  1 caacttttgaaaagataggggtcaaaaatgcaattaa 37  Q
    |||||||||||||||||| |||||||| |||||||||    
T  9695368 caacttttgaaaagatagcggtcaaaagtgcaattaa 9695404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 10726209 - 10726249
Alignment:
Q  1 caacttttgaaaagataggggtcaaaaatgcaattaagcct 41  Q
    |||||||||||||||||| ||| |||| |||||||||||||    
T  10726209 caacttttgaaaagatagtggttaaaagtgcaattaagcct 10726249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 10939978 - 10940018
Alignment:
Q  1 caacttttgaaaagataggggtcaaaaatgcaattaagcct 41  Q
    |||||||||||||||||| ||| |||| |||||||||||||    
T  10939978 caacttttgaaaagatagtggttaaaagtgcaattaagcct 10940018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 13019313 - 13019273
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcc 40  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  13019313 caacttttgaaaagataggggtccaaaagtgcaattaagcc 13019273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 17554319 - 17554359
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcc 40  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  17554319 caacttttgaaaagataggggtccaaaagtgcaattaagcc 17554359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 19956997 - 19957037
Alignment:
Q  1 caacttttgaaaagatagggg-tcaaaaatgcaattaagcc 40  Q
    |||||||||||||||||| || |||||||||||||||||||    
T  19956997 caacttttgaaaagatagaggatcaaaaatgcaattaagcc 19957037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 24542793 - 24542753
Alignment:
Q  2 aacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    ||||||||||||||||||||| ||||| |||||||||||||    
T  24542793 aacttttgaaaagataggggtccaaaagtgcaattaagcct 24542753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 34363091 - 34363131
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcc 40  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  34363091 caacttttgaaaagataggggtccaaaagtgcaattaagcc 34363131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 36095847 - 36095815
Alignment:
Q  10 aaaagataggggtcaaaaatgcaattaagcctt 42  Q
    ||||||||||||| |||||||||||||||||||    
T  36095847 aaaagataggggtgaaaaatgcaattaagcctt 36095815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 41205538 - 41205494
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagccttgt 44  Q
    ||||||||| |||||||||||| ||||| ||||||||||||||||    
T  41205538 caacttttggaaagataggggtccaaaagtgcaattaagccttgt 41205494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 42
Target Start/End: Original strand, 43051276 - 43051308
Alignment:
Q  10 aaaagataggggtcaaaaatgcaattaagcctt 42  Q
    ||||||||||||| |||||||||||||||||||    
T  43051276 aaaagataggggtgaaaaatgcaattaagcctt 43051308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 47096698 - 47096734
Alignment:
Q  1 caacttttgaaaagataggggtcaaaaatgcaattaa 37  Q
    ||||||||||||||||||||| ||||| |||||||||    
T  47096698 caacttttgaaaagataggggccaaaagtgcaattaa 47096734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 15738114 - 15738074
Alignment:
Q  1 caacttttgaaaagataggggtcaaaaa-tgcaattaagcc 40  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  15738114 caacttttgaaaagataggggtcaaaaagtgcaattaagcc 15738074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 30894389 - 30894436
Alignment:
Q  1 caacttttgaaaagataggggtc-aaaaatgcaattaagccttgttta 47  Q
    |||||||||||||||||||| || ||||||||||||||||||| ||||    
T  30894389 caacttttgaaaagatagggatccaaaaatgcaattaagcctttttta 30894436  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 2546645 - 2546687
Alignment:
Q  1 caacttttgaaaagatagggg-tcaaaaatgcaattaagcctt 42  Q
    ||||||||||||||||||||| |||||| ||||||||||||||    
T  2546645 caacttttgaaaagataggggttcaaaagtgcaattaagcctt 2546687  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 2710610 - 2710652
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcctt 42  Q
    |||||||||||||||||||||| ||||| ||||||||||||||    
T  2710610 caacttttgaaaagataggggtccaaaagtgcaattaagcctt 2710652  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 16597313 - 16597355
Alignment:
Q  1 caacttttgaaaagatagggg-tcaaaaatgcaattaagcctt 42  Q
    ||||||||||||||||||||| |||||| ||||||||||||||    
T  16597313 caacttttgaaaagataggggttcaaaagtgcaattaagcctt 16597355  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 23263185 - 23263143
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcctt 42  Q
    |||||||||||||||||||||| ||||| ||||||||||||||    
T  23263185 caacttttgaaaagataggggtccaaaagtgcaattaagcctt 23263143  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 28736713 - 28736755
Alignment:
Q  1 caacttttgaaaagataggggtc-aaaaatgcaattaagcctt 42  Q
    ||||||||||||||||||||||| |||| ||||||||||||||    
T  28736713 caacttttgaaaagataggggtctaaaagtgcaattaagcctt 28736755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 29401130 - 29401092
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaag 38  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  29401130 caacttttgaaaagataggggtccaaaaatgcaattaag 29401092  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 34082374 - 34082416
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcctt 42  Q
    |||||||||||||||||||||| ||||| ||||||||||||||    
T  34082374 caacttttgaaaagataggggtccaaaagtgcaattaagcctt 34082416  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 34606643 - 34606685
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcctt 42  Q
    |||||||||||||||||||||| ||||| ||||||||||||||    
T  34606643 caacttttgaaaagataggggtccaaaagtgcaattaagcctt 34606685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 35306975 - 35307017
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcctt 42  Q
    |||||||||||||||||||||| ||||| ||||||||||||||    
T  35306975 caacttttgaaaagataggggtccaaaagtgcaattaagcctt 35307017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 40687706 - 40687664
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcctt 42  Q
    |||||||||||||||||||||| ||||| ||||||||||||||    
T  40687706 caacttttgaaaagataggggtccaaaagtgcaattaagcctt 40687664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 3020867 - 3020908
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    |||||||||||||||||||||| ||||| |||||||||||||    
T  3020867 caacttttgaaaagataggggtccaaaagtgcaattaagcct 3020908  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 10331996 - 10331955
Alignment:
Q  1 caacttttgaaaagata-ggggtcaaaaatgcaattaagcct 41  Q
    ||||||||||||||||| |||||||||| |||||||||||||    
T  10331996 caacttttgaaaagatagggggtcaaaagtgcaattaagcct 10331955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 12049390 - 12049431
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    ||||||||| |||||||||||| |||||||||||||||||||    
T  12049390 caacttttggaaagataggggtccaaaaatgcaattaagcct 12049431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 13765299 - 13765258
Alignment:
Q  1 caacttttgaaaagataggggtc-aaaaatgcaattaagcct 41  Q
    ||||||||||||||||||||||| |||| |||||||||||||    
T  13765299 caacttttgaaaagataggggtcgaaaagtgcaattaagcct 13765258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 20040984 - 20041021
Alignment:
Q  1 caacttttgaaaagataggggtcaaaaatgcaattaag 38  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  20040984 caacttttgaaaagataggggccaaaagtgcaattaag 20041021  T

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Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 25631126 - 25631085
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    |||||||||||||||||||||| ||||| |||||||||||||    
T  25631126 caacttttgaaaagataggggtccaaaagtgcaattaagcct 25631085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 31456134 - 31456175
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    |||||||||||||||||||||| ||||| |||||||||||||    
T  31456134 caacttttgaaaagataggggtccaaaagtgcaattaagcct 31456175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 34734346 - 34734387
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    |||||||||||||||||||||| ||||| |||||||||||||    
T  34734346 caacttttgaaaagataggggtccaaaagtgcaattaagcct 34734387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 37887712 - 37887671
Alignment:
Q  1 caacttttgaaaagata-ggggtcaaaaatgcaattaagcct 41  Q
    ||||||||||||||||| |||||||||| |||||||||||||    
T  37887712 caacttttgaaaagatagggggtcaaaagtgcaattaagcct 37887671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 40687942 - 40687983
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    |||||||||||||||||||||| ||||| |||||||||||||    
T  40687942 caacttttgaaaagataggggtccaaaagtgcaattaagcct 40687983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 8339999 - 8339959
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcc 40  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  8339999 caacttttgaaaagataggggtccaaaagtgcaattaagcc 8339959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 11350838 - 11350806
Alignment:
Q  10 aaaagataggggtcaaaaatgcaattaagcctt 42  Q
    ||||||||||||| |||||||||||||||||||    
T  11350838 aaaagataggggtgaaaaatgcaattaagcctt 11350806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 26323648 - 26323688
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcc 40  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  26323648 caacttttgaaaagataggggtccaaaagtgcaattaagcc 26323688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 32555804 - 32555764
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcc 40  Q
    |||||||| ||||||||||||| ||||||||||||||||||    
T  32555804 caacttttaaaaagataggggtccaaaaatgcaattaagcc 32555764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 34169061 - 34169101
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcc 40  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  34169061 caacttttgaaaagataggggtccaaaagtgcaattaagcc 34169101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 20635 - 20593
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcctt 42  Q
    |||||||||||||||||||||| ||||| ||||||||||||||    
T  20635 caacttttgaaaagataggggtccaaaagtgcaattaagcctt 20593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0592 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0592
Description:

Target: scaffold0592; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 8983 - 9024
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    ||||||||| |||||||||||| |||||||||||||||||||    
T  8983 caacttttggaaagataggggtccaaaaatgcaattaagcct 9024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 803 - 762
Alignment:
Q  1 caacttttgaaaagataggggtc-aaaaatgcaattaagcct 41  Q
    ||||||||| ||||||||||||| ||||||||||||||||||    
T  803 caacttttggaaagataggggtctaaaaatgcaattaagcct 762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 79260 - 79301
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    |||||||||||||||||||||| ||||| |||||||||||||    
T  79260 caacttttgaaaagataggggtccaaaagtgcaattaagcct 79301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 238662 - 238621
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagcct 41  Q
    |||||||||||||||||||||| ||||| |||||||||||||    
T  238662 caacttttgaaaagataggggtccaaaagtgcaattaagcct 238621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 400979 - 401027
Alignment:
Q  1 caacttttgaaaagataggggt-caaaaatgcaattaagccttgtttat 48  Q
    ||||||||| |||||||||||| ||||| |||||||||||||| |||||    
T  400979 caacttttggaaagataggggtccaaaagtgcaattaagccttttttat 401027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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