View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13943_low_3 (Length: 710)
Name: NF13943_low_3
Description: NF13943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13943_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 335 - 694
Target Start/End: Original strand, 8155552 - 8155909
Alignment:
| Q |
335 |
ttctttaaagtgttatagttatgaaatatttttagactccattttattgattgtgacaccctagcttatagttgagtatatgagagagactatggggtct |
434 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8155552 |
ttctataaagtgttatagttatgaaatatttttagactccattttattgattgtgacaccctagcttatagttgagtatatgagagagactatggggtct |
8155651 |
T |
|
| Q |
435 |
cctgactagctgctttggggtagatgcgctagtgtcgaccatgccttatgtggttgacttatagtgtctgttagctatgtaggagttatctagtgagtgt |
534 |
Q |
| |
|
| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8155652 |
cttgactagctgctttggggtagatgcgccagtgttgaccatgccttatgtggttgacttatagtgtctgttagctatgtaggagttatctagtgagtgt |
8155751 |
T |
|
| Q |
535 |
ggtggtgacccgtgttatttattgtccgagtttcccttgattattagagacatgggacttattgcttagtacacctaggtttagcatattcctattggag |
634 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
8155752 |
ggtgctgacccgtgttatttattgtccgagtttcccttgattatt--agacatgggacttattgcttagtacacctaggtttagcatattcctattgcag |
8155849 |
T |
|
| Q |
635 |
ccttgtactttgaatatagtttgattatgttttcatttgacaaaggacgacataaaggtt |
694 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
8155850 |
ccttgtattttgaatatagtttgattatgttttcatctgacaaaggataacataaaggtt |
8155909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 63 - 298
Target Start/End: Original strand, 8155289 - 8155523
Alignment:
| Q |
63 |
aaatgcagggtgcatgagccatggaggattcatgctcttcagtcttctatatgctcgagacacatagatcaaaggcagtagtttttcttattttgttcta |
162 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
8155289 |
aaatgcagggtgcatgagccatggaagattcatgctcttcagtcttccatatgctcgagacacatagatcaaagacagtagttttccttattttgttcta |
8155388 |
T |
|
| Q |
163 |
tcaacataaattaatgtatttggtctaaaatttgattcaaatacattaactcttgttgatcaannnnnnnncttatatatagaaccagaggtagtatatt |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||| ||||||||||||||||| |
|
|
| T |
8155389 |
tcaacataaattaatgtatttggtctaaaatttgattcaaatacattaactcttgtcgat-aaatttttttcttatatataggaccagaggtagtatatt |
8155487 |
T |
|
| Q |
263 |
cttaagatttgagtcttatttaaactttctaaaatt |
298 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
8155488 |
cttaagatttgagtcttatataatctttctaaaatt |
8155523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 8154833 - 8154890
Alignment:
| Q |
1 |
gttctaaccaaggatcaattcaaaaacaaaggaagtaaaaggaattaagaacaatatt |
58 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
8154833 |
gttctaaccaaggatcaattcaagaacaaaggaaataaaaggaattaagaacaatatt |
8154890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 225
Target Start/End: Complemental strand, 31280240 - 31280177
Alignment:
| Q |
162 |
atcaacataaattaatgtatttggtctaaaatttgattcaaatacattaactcttgttgatcaa |
225 |
Q |
| |
|
|||||||||||||||||||| |||| ||| ||||| |||||||||||| | ||||||||||| |
|
|
| T |
31280240 |
atcaacataaattaatgtatatggtacaaattttgaaccaaatacattaaattttgttgatcaa |
31280177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 22756903 - 22756961
Alignment:
| Q |
166 |
acataaattaatgtatttggtctaaaatttgattcaaatacattaactcttgttgatca |
224 |
Q |
| |
|
|||||||| ||||||||||| |||| ||||| |||||||| |||||| |||||||||| |
|
|
| T |
22756903 |
acataaatcgatgtatttggtataaattttgaatcaaatacgttaacttttgttgatca |
22756961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 221
Target Start/End: Original strand, 28004650 - 28004707
Alignment:
| Q |
164 |
caacataaattaatgtatttggtctaaaatttgattcaaatacattaactcttgttga |
221 |
Q |
| |
|
||||| ||||||||||||||||| ||| ||||| |||||||||||||| ||||||| |
|
|
| T |
28004650 |
caacaaaaattaatgtatttggtacaaattttgagccaaatacattaacttttgttga |
28004707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University