View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13943_low_32 (Length: 293)
Name: NF13943_low_32
Description: NF13943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13943_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 16 - 270
Target Start/End: Original strand, 47480667 - 47480921
Alignment:
| Q |
16 |
atcgttagcacatctcaatcaaatgttccttatcatctccaaatagcatcaaaaccaaccaatatgcagttgnnnnnnntatctaannnnnnnnnnnnaa |
115 |
Q |
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| T |
47480667 |
atcgttagcacatctcaatcaaatgttccttatcatctccaaatagcatcaaaaccaaccaatatgcagttgaaaaaaatatctaacccccaccccccaa |
47480766 |
T |
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| Q |
116 |
tatcgatttccagattactttaaatcactttctaaatcataattgcacaaacaagcctataaacaaaaaatgtacacctcataagacctctttagataaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
47480767 |
tatcgatttccagattactttaaatcactttctaaatcataattgcacaaacaaggctataaaccaaaaatgtacacctcataagacctctttagataaa |
47480866 |
T |
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| Q |
216 |
cagtttaattaactgccaatcgcataaacaattattatatacgcaagtgtttggc |
270 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
47480867 |
cagtttaattaactgccgatcgcataaacaattattatatacgcaagtgtttggc |
47480921 |
T |
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