View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13943_low_33 (Length: 289)
Name: NF13943_low_33
Description: NF13943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13943_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 11 - 270
Target Start/End: Complemental strand, 26429159 - 26428900
Alignment:
| Q |
11 |
ttattctcatacctaactgagagtgcctccatgattgaatggggtggtgaagttgtgaactctgagtctgatggacagcacacatcaacacaaatgggaa |
110 |
Q |
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| T |
26429159 |
ttattctcatacctaactgagagtgcctccatgattgaatggggtggtgaggttgtgaactctgagtctgatggacagcacacatcaacacaaatgggaa |
26429060 |
T |
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| Q |
111 |
gtggacattttcctgatgaaggttttggcaaggctagttatttcaaaaatattcaggttgttgatggtgacaacaagttaagggctccaaaagatcttgg |
210 |
Q |
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| T |
26429059 |
gtggacattttcctgatgaaggttttggcaaggctagttatttcaaaaatattcaggttgttgatggtgacaacaagttaagggctccaaaagatcttgg |
26428960 |
T |
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| Q |
211 |
tacttacactgaaaaagataactgttataatgtcaaaactggtaatgctggtgattgggg |
270 |
Q |
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| T |
26428959 |
tacctacactgaaaaagataactgttataatgtcaaaactggtaatgctggtgattgggg |
26428900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 39 - 175
Target Start/End: Original strand, 36693456 - 36693592
Alignment:
| Q |
39 |
ccatgattgaatggggtggtgaagttgtgaactctgagtctgatggacagcacacatcaacacaaatgggaagtggacattttcctgatgaaggttttgg |
138 |
Q |
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| T |
36693456 |
ccatgatagaatggggaggagaagttgttaattccgagcctgatggtcaacacacttcaactcagatgggaagtggtcattttcctgaagaaggatttgg |
36693555 |
T |
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| Q |
139 |
caaggctagttatttcaaaaatattcaggttgttgat |
175 |
Q |
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| T |
36693556 |
caaagcaagttattttaggaatattcaagtggttgat |
36693592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 137
Target Start/End: Complemental strand, 29211197 - 29211149
Alignment:
| Q |
89 |
cacacatcaacacaaatgggaagtggacattttcctgatgaaggttttg |
137 |
Q |
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| T |
29211197 |
cacacatcaacccaaatgggtagtggacattttgctgaagagggttttg |
29211149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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