View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13943_low_34 (Length: 274)
Name: NF13943_low_34
Description: NF13943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13943_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 11 - 235
Target Start/End: Original strand, 14337401 - 14337638
Alignment:
| Q |
11 |
cataggaagctaaaaaatcatttgatgaaaatttaatgtaggacatttgtgaaagtctaatgtagattatcttttgataaaagaaaaagacttcattaaa |
110 |
Q |
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| T |
14337401 |
cataggaagctaaaaaatcatttgatgaaaatttaatgtaggacatttgtgaaagtctaatgtagattatcttttgataaaagaaaaagacttcattaaa |
14337500 |
T |
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| Q |
111 |
tcattatttgttaacttaagttatatcacaattcaactagattactacaacttcaaatcatttagatattggttaaactttaat-------------tac |
197 |
Q |
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| T |
14337501 |
tcattatttgttaacttaagttatatcacaattcaactagattactacaacttcaaatcatttagatattggttaaactttaattaataggaatctctac |
14337600 |
T |
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| Q |
198 |
cattacacctcagaaacaaagacatagaaagaataaac |
235 |
Q |
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| T |
14337601 |
cattacacctcagaaacaaagacatagaaagaataaac |
14337638 |
T |
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