View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13943_low_40 (Length: 241)
Name: NF13943_low_40
Description: NF13943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13943_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 13 - 222
Target Start/End: Complemental strand, 56229956 - 56229749
Alignment:
| Q |
13 |
aatattaagtatctattttatttta-gaaatttgacctagtatatgtgtgcaaaataacaaagtcataataatatagttaaaagttaacaatggtagata |
111 |
Q |
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| T |
56229956 |
aatattaattatctattttattttatgaaatttgacgtagtatatgtgtgcaaaataacaaagtcataataatatagttaaaagttaacaatggtagata |
56229857 |
T |
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| Q |
112 |
caagaagaagaaagnnnnnnnnnntgataaaattttaccagtgtcaaggttcccaataataacatcttcaccgtatctagcttttgtaaggagggaatga |
211 |
Q |
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| T |
56229856 |
caagaagaagaa---gaaaaaaaatgataaaattttaccagtgtcaaggttcccaataataacatcttcaccgtatctagcttttgtaaggagggaatga |
56229760 |
T |
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| Q |
212 |
gaaggagccac |
222 |
Q |
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||||||||||| |
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| T |
56229759 |
gaaggagccac |
56229749 |
T |
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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 39187207 - 39187131
Alignment:
| Q |
146 |
ttaccagtgtcaaggttcccaataataacatcttcaccgtatctagcttttgtaaggagggaatgagaaggagccac |
222 |
Q |
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| T |
39187207 |
ttaccagaatcaagattcccaataataacatcttcaccgtatcttgcttttctaaagagggaatgagaaggagccac |
39187131 |
T |
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