View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13943_low_41 (Length: 236)
Name: NF13943_low_41
Description: NF13943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13943_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 14 - 220
Target Start/End: Complemental strand, 19962867 - 19962661
Alignment:
| Q |
14 |
gttcactgttcaaaagaggggtagaaatagaattacccaaaagagagtaaccaaaacaaacctttatatcttccaatgtaattgttgattctccccaagg |
113 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19962867 |
gttcactgttcaaaagaggggtagaaatagaatcacccaaaagagagtaaccaaaacaaacctttatatcttccaatgtaattgttgattctccccaagg |
19962768 |
T |
|
| Q |
114 |
gaaaacaaaagtattggtcttggaacaccatctattagcaagttgaagaatcaaatcatcatcccttttgatttcataagtagaagctttgattgcattg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19962767 |
gaaaacaaaagtattggtcttggaacaccatctattagcaagttgaagaatcaaatcatcatcccttttgatttcataagtagaagctttgattgcattg |
19962668 |
T |
|
| Q |
214 |
tatattc |
220 |
Q |
| |
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||||||| |
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|
| T |
19962667 |
tatattc |
19962661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 14 - 220
Target Start/End: Original strand, 20027536 - 20027742
Alignment:
| Q |
14 |
gttcactgttcaaaagaggggtagaaatagaattacccaaaagagagtaaccaaaacaaacctttatatcttccaatgtaattgttgattctccccaagg |
113 |
Q |
| |
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|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
20027536 |
gttcactgttcaaaagaggggtggaaatagaatcacccaaaagagagtaaccaaaacaaacctttatatcttccaatgtgattgttgattctccccaagg |
20027635 |
T |
|
| Q |
114 |
gaaaacaaaagtattggtcttggaacaccatctattagcaagttgaagaatcaaatcatcatcccttttgatttcataagtagaagctttgattgcattg |
213 |
Q |
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||| ||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
20027636 |
gaacacaaaggtgttggtcttggaacaccatctattagcaagttgaagcatcaaatcatcatcccttttgatttcataagtagaagctttgattgcatgg |
20027735 |
T |
|
| Q |
214 |
tatattc |
220 |
Q |
| |
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||||||| |
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| T |
20027736 |
tatattc |
20027742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 14 - 220
Target Start/End: Original strand, 20020721 - 20020927
Alignment:
| Q |
14 |
gttcactgttcaaaagaggggtagaaatagaattacccaaaagagagtaaccaaaacaaacctttatatcttccaatgtaattgttgattctccccaagg |
113 |
Q |
| |
|
||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
20020721 |
gttcactgttctcaagaggtttagaaatagaatcacccaaaagagagtaaccaaaacaaacctttatatcttccaatgtgattgttgattctccccaagg |
20020820 |
T |
|
| Q |
114 |
gaaaacaaaagtattggtcttggaacaccatctattagcaagttgaagaatcaaatcatcatcccttttgatttcataagtagaagctttgattgcattg |
213 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| | |
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| T |
20020821 |
gaacacaaaagtattggtcttggaacaccatctattagcaagttgaagaatcaaatcatcatcccttttgatttcataagtagaagctgtgatagcatgg |
20020920 |
T |
|
| Q |
214 |
tatattc |
220 |
Q |
| |
|
||||||| |
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|
| T |
20020921 |
tatattc |
20020927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 14 - 220
Target Start/End: Complemental strand, 19967557 - 19967351
Alignment:
| Q |
14 |
gttcactgttcaaaagaggggtagaaatagaattacccaaaagagagtaaccaaaacaaacctttatatcttccaatgtaattgttgattctccccaagg |
113 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
19967557 |
gttcactgttcaaaagaggggtggaaatagaatcacccaaaagagagtaaccaaaacaaacctttatatcttccaatgtgattgttgattctccccaagg |
19967458 |
T |
|
| Q |
114 |
gaaaacaaaagtattggtcttggaacaccatctattagcaagttgaagaatcaaatcatcatcccttttgatttcataagtagaagctttgattgcattg |
213 |
Q |
| |
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||| ||||| || |||||||||||||||||||||| |||||||||||| |||||| |||||| ||||||||||||||||||||||||| |||| |||| | |
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| T |
19967457 |
gaacacaaatgtgttggtcttggaacaccatctatcagcaagttgaaggatcaaagcatcattccttttgatttcataagtagaagctgtgatagcatgg |
19967358 |
T |
|
| Q |
214 |
tatattc |
220 |
Q |
| |
|
||||||| |
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|
| T |
19967357 |
tatattc |
19967351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 103 - 220
Target Start/End: Original strand, 14856422 - 14856539
Alignment:
| Q |
103 |
tctccccaagggaaaacaaaagtattggtcttggaacaccatctattagcaagttgaagaatcaaatcatcatcccttttgatttcataagtagaagctt |
202 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
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| T |
14856422 |
tctccccaagggaacacaaaagtattggtcttggaacaccatctattagcaagttcaagaataaaatcatcatcccttttgatttcataagtagaagctg |
14856521 |
T |
|
| Q |
203 |
tgattgcattgtatattc |
220 |
Q |
| |
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||||||||| ||||||| |
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|
| T |
14856522 |
tgattgcatgatatattc |
14856539 |
T |
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