View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13943_low_43 (Length: 235)
Name: NF13943_low_43
Description: NF13943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13943_low_43 |
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Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 4 - 222
Target Start/End: Original strand, 43396612 - 43396830
Alignment:
| Q |
4 |
atctcgaagaatataccactccccttcacctctattagcacgctcctccactaacgcctcccacatcctcctcttagccaccaaatcacatttagaataa |
103 |
Q |
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| T |
43396612 |
atctccaagaatacaccacgccccttcacctctattagcacgctcctccactaacgcctcccacatcctc-tcttagccaccaaatcacatttagaataa |
43396710 |
T |
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| Q |
104 |
acattaaccacaatacatctcttcttcttcacccac-attcaaggcacacccccacatatccttccccttgaaaagaaaatagaaaatttgcgcttgatt |
202 |
Q |
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| T |
43396711 |
acattaaccacaatacatctcttcttcttcaccccccattcaaggcacacccccacatatccttccccttgaaaagaaaatcgaaaatttgcgcttgatt |
43396810 |
T |
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| Q |
203 |
ttctccaaagagaaagaatt |
222 |
Q |
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|||||||||||||||||||| |
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| T |
43396811 |
ttctccaaagagaaagaatt |
43396830 |
T |
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Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 25318447 - 25318375
Alignment:
| Q |
139 |
cattcaaggcacacccccacatatccttccccttgaaaagaaaatagaaaatttgcgcttgattttctccaaa |
211 |
Q |
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| T |
25318447 |
cattcaaggcacacccccacatatccttccccttgaaaagaaaaaaaaaaacaagcatttgattttctccaaa |
25318375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 221
Target Start/End: Original strand, 9662531 - 9662604
Alignment:
| Q |
148 |
cacacccccacatatccttccccttgaaaagaaaatagaaaatttgcgcttgattttctccaaagagaaagaat |
221 |
Q |
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| T |
9662531 |
cacacccctacatatccttccctttggaatgaaaataacaagttagcacttgattttctccaaatagaaagaat |
9662604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 61 - 179
Target Start/End: Original strand, 8507639 - 8507758
Alignment:
| Q |
61 |
ctcccacatcctcctcttagccaccaaatcacatttagaataaacattaaccacaatacatctcttcttcttcac-ccacattcaaggcacacccccaca |
159 |
Q |
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|||||||| |||||| ||||||||||||||||| |||||||| ||||| | |||||||||||| | |||| ||| || || || | ||||| |||||| |
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| T |
8507639 |
ctcccacaacctccttttagccaccaaatcacacttagaatacacattgatcacaatacatctagtattctccacaccccaatctaaacacactcccaca |
8507738 |
T |
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| Q |
160 |
tatccttccccttgaaaaga |
179 |
Q |
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| T |
8507739 |
taaccttccccttgaaaaga |
8507758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 130
Target Start/End: Original strand, 8248300 - 8248368
Alignment:
| Q |
62 |
tcccacatcctcctcttagccaccaaatcacatttagaataaacattaaccacaatacatctcttcttc |
130 |
Q |
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||||||| |||||||| ||| ||||||||||||||| ||||||||| | || ||||||| | |||||| |
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| T |
8248300 |
tcccacactctcctcttggccgccaaatcacatttagcataaacatttatcaaaatacatatattcttc |
8248368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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