View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13943_low_47 (Length: 226)
Name: NF13943_low_47
Description: NF13943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13943_low_47 |
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Alignment Details
Target: chr3 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 85 - 208
Target Start/End: Complemental strand, 9215544 - 9215421
Alignment:
| Q |
85 |
ctcacaagaaacataagtttagtttcttttttgagaaaattcttgaaccacaatgcagaaagtttctcgtatcttttcaaaccattcttgtaatctacaa |
184 |
Q |
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| T |
9215544 |
ctcacaagaaacataagtttagtttcttttttgagaaaattcttgaaccacaatgcagaaagtttctcgtatcttttcaaaccattcttgtaatccacaa |
9215445 |
T |
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| Q |
185 |
aggtcattccaaatctcacagaat |
208 |
Q |
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| T |
9215444 |
atgtcattccaaatctcacagaat |
9215421 |
T |
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Target: chr4 (Bit Score: 74; Significance: 4e-34; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 91 - 200
Target Start/End: Original strand, 25158812 - 25158921
Alignment:
| Q |
91 |
agaaacataagtttagtttcttttttgagaaaattcttgaaccacaatgcagaaagtttctcgtatcttttcaaaccattcttgtaatctacaaaggtca |
190 |
Q |
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| T |
25158812 |
agaaacataagcttagtttcttttttgagaaaattcttaaaccacaatgcagacaacttctggtatcttttcaagccattcttataatcaacaaaggtca |
25158911 |
T |
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| Q |
191 |
ttccaaatct |
200 |
Q |
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| T |
25158912 |
ttccaaatct |
25158921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 118 - 205
Target Start/End: Complemental strand, 25254006 - 25253919
Alignment:
| Q |
118 |
agaaaattcttgaaccacaatgcagaaagtttctcgtatcttttcaaaccattcttgtaatctacaaaggtcattccaaatctcacag |
205 |
Q |
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| T |
25254006 |
agaaaattcttgaaccacaaccctgagagcttttgatatcttttcaaaccatttttgtaatctacaaaggtcattccaaatctcacag |
25253919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 116 - 205
Target Start/End: Original strand, 25179001 - 25179090
Alignment:
| Q |
116 |
tgagaaaattcttgaaccacaatgcagaaagtttctcgtatcttttcaaaccattcttgtaatctacaaaggtcattccaaatctcacag |
205 |
Q |
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| T |
25179001 |
tgagaaaattcttgaaccacaatcctgaaagcttttgatatcttttcaaaccatctttgtaatctataaaagtcattccaaatctcacag |
25179090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 117 - 205
Target Start/End: Original strand, 25167300 - 25167388
Alignment:
| Q |
117 |
gagaaaattcttgaaccacaatgcagaaagtttctcgtatcttttcaaaccattcttgtaatctacaaaggtcattccaaatctcacag |
205 |
Q |
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| T |
25167300 |
gagaaaattctggaaccacaatcccgagagcttttgatatcttttcaaaccatttttgtaatctacgaatgtcattccaaatctcacag |
25167388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 154 - 203
Target Start/End: Complemental strand, 30363156 - 30363107
Alignment:
| Q |
154 |
tatcttttcaaaccattcttgtaatctacaaaggtcattccaaatctcac |
203 |
Q |
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| T |
30363156 |
tatcttttcaagtcattgttgtaatctacaaagttcattccaaacctcac |
30363107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 199
Target Start/End: Complemental strand, 42292664 - 42292576
Alignment:
| Q |
111 |
ttttttgagaaaattcttgaaccacaatgcagaaagtttctcgtatcttttcaaaccattcttgtaatctacaaaggtcattccaaatc |
199 |
Q |
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| T |
42292664 |
ttttttgagaaaattcgtaaaccacattgccgacaacttttggtgtcttttcaaaccatttttgtaatccacaaaattcatgccaaatc |
42292576 |
T |
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