View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13943_low_5 (Length: 613)
Name: NF13943_low_5
Description: NF13943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13943_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 155; Significance: 6e-82; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 87 - 261
Target Start/End: Complemental strand, 18813430 - 18813256
Alignment:
| Q |
87 |
agttctgcctggattcttgacaactccttctttatgttgtttcccaaaacctattaataaatcacaaacaaattgtttaatatatatgtccaaaattagc |
186 |
Q |
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| T |
18813430 |
agttctgcctggattcttgacaactccttctttatgttgtttcccaaaacctattaataaatcacaaacaaattgtttaatatatatgtccaaaattagc |
18813331 |
T |
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| Q |
187 |
tcaaacgatgagatgaagaataaatcatcaatttagttcctaaactatccgatttagttcataaaatatatgaaa |
261 |
Q |
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| T |
18813330 |
tcaaaggatgagatgaagaataaatcatcaatttagtccctaaactatccgatttagttcaaaaagcatatgaaa |
18813256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 260 - 358
Target Start/End: Complemental strand, 18812926 - 18812828
Alignment:
| Q |
260 |
aagaaaatttgtatgtaattaaaggtgcatcaatataatcaagcaataataatgagtcgagatgtttcaaagcttaaatcttaacctatcaaaggttct |
358 |
Q |
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| T |
18812926 |
aagaaaatttgtatgtaagtaaaggtgcatcaatataatcaagcaataataatgagtcgagatgtttcaaagcttaaatcttaacctatcaaatgttct |
18812828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 18814024 - 18813951
Alignment:
| Q |
18 |
gaagatggtagagacctcagcttaattagtttcttagaggaagaagctgatatagaccttaggttaatcagttc |
91 |
Q |
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| T |
18814024 |
gaagatggtagagacctcagcttaattagtttcttagaggaagaagctgatatagacctcaggttaatcagttc |
18813951 |
T |
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Target: chr4 (Bit Score: 118; Significance: 7e-60; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 87 - 250
Target Start/End: Original strand, 48249511 - 48249675
Alignment:
| Q |
87 |
agttctgcctggattcttgacaactccttctttatgttgtttcccaaaacctattaat-aaatcacaaacaaattgtttaatatatatgtccaaaattag |
185 |
Q |
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| T |
48249511 |
agttctgtctggattcttgacaactccttctttatgttgtttcccaaaacctattaataaaatcacaaacaaattg-ttaatatatatgtccaaaattag |
48249609 |
T |
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| Q |
186 |
ctcaaacgatgaga-tgaagaataaatcatcaatttagttcctaaactatccgatttagttcataa |
250 |
Q |
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| T |
48249610 |
ctcaaagggtgagattaaagaataaatcatcaatttagtccctaaactatcctatttagttcataa |
48249675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 26 - 91
Target Start/End: Original strand, 48248906 - 48248971
Alignment:
| Q |
26 |
tagagacctcagcttaattagtttcttagaggaagaagctgatatagaccttaggttaatcagttc |
91 |
Q |
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| T |
48248906 |
tagagacctcagcttaattagtttcttagaggaagaagctgatatggacctcagcttaatcagttc |
48248971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 100; Significance: 4e-49; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 260 - 440
Target Start/End: Complemental strand, 40442133 - 40441949
Alignment:
| Q |
260 |
aagaaaatttgtatgtaattaaaggtgcatcaatataatcaagcaataataatgagtcgagatgtttcaaagcttaaatcttaacctatcaaaggttcta |
359 |
Q |
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||||||||||||| | || ||||| ||||||| |||||||||||||| ||||||||||||| ||||||||||||| |||||||||||| ||||||||||| |
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| T |
40442133 |
aagaaaatttgtacgcaagtaaagatgcatcagtataatcaagcaatgataatgagtcgaggtgtttcaaagcttgaatcttaacctaccaaaggttcta |
40442034 |
T |
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| Q |
360 |
taacgcagattgcagaga----gaccagaatgtaggatctaaaccagttagatgactataaatgactgaccaaggagcaataaca |
440 |
Q |
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| T |
40442033 |
taatgcagaatgcagagatacctaccagaatgcaggatataaaccagttagatgactatgcatgaccgaccaaggagcaataaca |
40441949 |
T |
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