View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13943_low_7 (Length: 604)
Name: NF13943_low_7
Description: NF13943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13943_low_7 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 225 - 604
Target Start/End: Complemental strand, 56230312 - 56229933
Alignment:
| Q |
225 |
tgattcacaaactgcgacatgaaattgcccaataaaatactatatggttaacaatgttcaaataaatatttgattagttacaatgttatctattaattaa |
324 |
Q |
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| T |
56230312 |
tgattcacaaactttgacataaaattgcacaataaaatactatatggttaacaatgttcaaataaatatttgattagtcacaatgttatctattaattaa |
56230213 |
T |
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| Q |
325 |
gnnnnnnnttaagaaggcttttgaactaattataaccccatgcttttcatgtttatattgtgactaatgaatatatgtgnnnnnnnnnnaa-cacgctaa |
423 |
Q |
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| T |
56230212 |
gaaaaaaattaagaaggcttttgaactaattataaccc-atgattttcatgtttatattgtgactaatgaatatatgtgttttttttttaaacacactaa |
56230114 |
T |
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| Q |
424 |
aatgaaacttatattaaacaacaaaagatgcgcctcttagcacaaagtatgtgtcgaagaagatcaacaaggtttaaatacaaaactccatcaccaataa |
523 |
Q |
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| T |
56230113 |
aatgaaacttatattaaacaacaaaagatgcgcctcttaacacaaagtatgtgtcaaggaagatcaacaaagtttaaatacaaaactccatcaccaataa |
56230014 |
T |
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| Q |
524 |
caagaaacaaagtaataacacttgaaaattataagttaataaacacgtaatttgaacaatattaagtatctattttatttt |
604 |
Q |
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| T |
56230013 |
caagaaacaaagtaataacacttgaaaattataagttaataaacacgtaatttgaacaatattaattatctattttatttt |
56229933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 422 - 463
Target Start/End: Complemental strand, 43277076 - 43277035
Alignment:
| Q |
422 |
aaaatgaaacttatattaaacaacaaaagatgcgcctcttag |
463 |
Q |
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| T |
43277076 |
aaaatgaaacttatattaaacgacaaaagatgctcctcttag |
43277035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 39188111 - 39188072
Alignment:
| Q |
12 |
atgcaagagaaatactactaactagtatgaatattgaatc |
51 |
Q |
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| T |
39188111 |
atgcaagggaaatactactaactattatgaatattgaatc |
39188072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 422 - 468
Target Start/End: Original strand, 7125648 - 7125694
Alignment:
| Q |
422 |
aaaatgaaacttatattaaacaacaaaagatgcgcctcttagcacaa |
468 |
Q |
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| T |
7125648 |
aaaatgaaacttatattaaacgataaaagatgctcctctcagcacaa |
7125694 |
T |
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