View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13943_low_8 (Length: 554)
Name: NF13943_low_8
Description: NF13943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13943_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 25 - 538
Target Start/End: Complemental strand, 6308545 - 6308018
Alignment:
| Q |
25 |
atacttgaaaaatgttatacctatgactttagagaacatgtttttgtcggttagatgctatatttttaactatttcta-ataaaatgctgtggtatatga |
123 |
Q |
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| T |
6308545 |
atacttgaaaaatgttatacctatgactttagagaacatgtttttgtcggttagatgctatatttttaactatttctatataaaatgttgtggtatatga |
6308446 |
T |
|
| Q |
124 |
cttcnnnnnnnnnn----accaacgttgtagtgtgattttattcttctaataattaagaaaaatctatcgtcaattagtattttcaatactaattaagtg |
219 |
Q |
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||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
6308445 |
ctttttttttttttttttaccaacgttgtagtgtgactttattcttctaataattaagaaaaatctatcttcaattagtattttcaatactaactaagtg |
6308346 |
T |
|
| Q |
220 |
gacaagaataccattgcatcaatagaaaaatacattaaccaagtcacaactactctaaaatgcttccttcaaaaaactactctaaaatgctgaatgttga |
319 |
Q |
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| T |
6308345 |
gacaagaataccattgcatcaatagaaaaatacattaaccaagtcacaactactctaaaatgattccttcaaaaaactactctaaaatgctgaatgttga |
6308246 |
T |
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| Q |
320 |
tatccgtaagatttcaaaaggtac-nnnnnnnnnnnacacaaaaaagttacaaatttttcatacagtaatcaataccactatatcatcatatagaaacag |
418 |
Q |
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||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
6308245 |
tataagtaagatttcaaaaggtacatttttttttttacacaaaaaagttacaaatttttcatacagtaatcaataccactatgtcatcatatagaaacag |
6308146 |
T |
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| Q |
419 |
aaattcatcaacttttaggggtcctcatttcaatgcaagtgtttcctttagcttacatatcttactttgaa--------aatactgtatgcttggataat |
510 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
6308145 |
aaattcatcaacttttaggggtcctcatttcaatgcaagtgtttcatttagcttacatatcttactttgaaaatatcataatactgtatgcttggataat |
6308046 |
T |
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| Q |
511 |
atttagatactacacctatgtactatgt |
538 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
6308045 |
atttagatactacacctatgtactatgt |
6308018 |
T |
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