View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13943_low_9 (Length: 552)
Name: NF13943_low_9
Description: NF13943
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13943_low_9 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 532; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 1 - 552
Target Start/End: Original strand, 34520306 - 34520857
Alignment:
| Q |
1 |
gttaaagaacatgaagaagcaggtttatctacttgacataacattactctcacaactaagaaaagatggacatccttctatctatactaaggaccataca |
100 |
Q |
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| T |
34520306 |
gttaaagaacatgaagaagcaggtttatctacttgacataacattactctcacaactaagaaaagatggacatccttctatctatactaaagatcataca |
34520405 |
T |
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| Q |
101 |
ggcaatgactgtagtcactggtgcttaccaggactgcctgatacttggaacatactcctaaatgcagctctaataatgtgaaattagagtattattatga |
200 |
Q |
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| T |
34520406 |
ggcaatgactgtagtcactggtgcttaccaggactgcctgatacttggaacatactcctaaatgcagctctaataatgtgaaattagagtattattatga |
34520505 |
T |
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| Q |
201 |
gtagatgcttactaatacattacactcgattcttgaagaatagatcacaaagggagatcaaattgttacaggtgttctgaataatactataataatataa |
300 |
Q |
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| T |
34520506 |
gtagatgcttactaatacattacactcgattcttgaagaatagatcacaaagggagatcaaattgttacaggtgttctgaataatactataataatataa |
34520605 |
T |
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| Q |
301 |
tttacaatgaatcacaaaatgcaattgaaatttcacattgattaatgcacactttatgttgaatatctcaagtttgttaccctttataaagtttagttta |
400 |
Q |
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| T |
34520606 |
tttacaatgaatcacaaaatgcaattgaaatttcacattgattaatgcacactttatgttgaatatctcatgtttgttaccctttataaagtttagttta |
34520705 |
T |
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| Q |
401 |
atcaattatatttgaagaagtgttccataatgcataataaattgcaaaaacaatgcaaatgcaaagtaatttaattacaatatattaccaaagtattttt |
500 |
Q |
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| T |
34520706 |
atcaattatatttgaagaagtgttccataatgcataataaattgcaaaaacaatgcaaatgcaaagtaatttaattacaatatattaccaatgtattttt |
34520805 |
T |
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| Q |
501 |
cttacaagttttgagacgcaaaattacctttcacataaaaatcgagtgcttc |
552 |
Q |
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| T |
34520806 |
cttacaagttttgagatgcaaaattacctttcacataaaaatcgagtgcttc |
34520857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 34508155 - 34508347
Alignment:
| Q |
1 |
gttaaagaacatgaagaagcaggtttatctacttgacataacattactctcacaactaagaaaagatggacatccttctatctatactaaggaccataca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||| |||||||||||||||||||||||| | || |
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| T |
34508155 |
gttaaagaacatgaagaagcaggtttatctacttgacataacacttctgtcacaactaagaaaagatgcacatccttctatctatactaaggatccaact |
34508254 |
T |
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| Q |
101 |
ggcaatgactgtagtcactggtgcttaccaggactgcctgatacttggaacatactcctaaatgcagctctaataatgtgaaattagagtatt |
193 |
Q |
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| T |
34508255 |
ggcattgattgtagtcattggtgcctaccaggactgcctgatacttggaacatactcctaaatgcagctctaatcatttgaaattagagtatt |
34508347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 23 - 151
Target Start/End: Complemental strand, 4686054 - 4685926
Alignment:
| Q |
23 |
gtttatctacttgacataacattactctcacaactaagaaaagatggacatccttctatctatactaaggaccatacaggcaatgactgtagtcactggt |
122 |
Q |
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| T |
4686054 |
gtttatctacttgacattacacttctctcacaactaaggaaagatgcacacccttcttcctatagtggtgatcatgcaggcaatgattgcagccattggt |
4685955 |
T |
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| Q |
123 |
gcttaccaggactgcctgatacttggaac |
151 |
Q |
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| T |
4685954 |
gcttaccaggattacctgatacttggaac |
4685926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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