View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13944_high_10 (Length: 413)
Name: NF13944_high_10
Description: NF13944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13944_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 363; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 19 - 401
Target Start/End: Complemental strand, 44944212 - 44943830
Alignment:
| Q |
19 |
ctgatgatacatcttccatacttcaaagtacttcttcaatcaaacgtatttcaattaccatttgcttccttgttgcatttttatgcaatgttcagtctat |
118 |
Q |
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| T |
44944212 |
ctgatgatacatcttccatacttcaaagtacttcttcaatcaaacgtatttcgattaccatttgcttccttgttgcatttttatgcaatgttcagtctat |
44944113 |
T |
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| Q |
119 |
aaggtgctattgtcatgtcagttttttaatcaccgcacctacactcagagataaaaaggcatatatggaatatattgctaagacattgaatcgtgctagt |
218 |
Q |
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| T |
44944112 |
aaggtgctattgtcatgtcagttttttaatcaccgcacctacactccgagataaaaaggcatatatggaatatattgctaagacattgaatcgtgctagt |
44944013 |
T |
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| Q |
219 |
cactcttggtcccttggcttgcgagcattttacttatcatttcctctcttcctatggatttatgggcctataccaatgtttacttgttgctgtttgacat |
318 |
Q |
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| T |
44944012 |
cactcttggtcccttggattgcgagcattttacttatcatttcctctcttcctatggatttatgggcctataccaatgtttgcttgttgctgtttgacat |
44943913 |
T |
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| Q |
319 |
ctttcagtttgtactttttggatacaacaactagaatcacaagggatcttcatagtgactcattcagaaaggagagtgatgat |
401 |
Q |
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| T |
44943912 |
cattcagtttgtactttttggatacaacaactagaatcacaagggatcttcatagtgactcattcagaaaggagagtgatgat |
44943830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 28 - 403
Target Start/End: Complemental strand, 44945857 - 44945482
Alignment:
| Q |
28 |
catcttccatacttcaaagtacttcttcaatcaaacgtatttcaattaccatttgcttccttgttgcatttttatgcaatgttcagtctataaggtgcta |
127 |
Q |
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| T |
44945857 |
catcttccatacttcaaagtacttcttcaatcaaacacatttcgattaccatctgcttccttgttgcatttttatgcaatgttcagtctataagatgcta |
44945758 |
T |
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| Q |
128 |
ttgtcatgtcagttttttaatcaccgcacctacactcagagataaaaaggcatatatggaatatattgctaagacattgaatcgtgctagtcactcttgg |
227 |
Q |
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| T |
44945757 |
ttgtcatgtcagctttttaatcaacgcgccaacactcagagataaaaaggcatatatggaatatattgctaagacattgaatcgcgctagttactcctgg |
44945658 |
T |
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| Q |
228 |
tcccttggcttgcgagcattttacttatcatttcctctcttcctatggatttatgggcctataccaatgtttacttgttgctgtttgacatctttcagtt |
327 |
Q |
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| T |
44945657 |
tcccttggattgcgagcattttacttatcatttcctctcttcctatggatttatgggcctataccaatgtttgcttgttgctgtttgacatcattcagtt |
44945558 |
T |
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| Q |
328 |
tgtactttttggatacaacaactagaatcacaagggatcttcatagtgactcattcagaaaggagagtgatgatgt |
403 |
Q |
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| T |
44945557 |
tgtactttttggatacaacaactagaatcacaagggatcttcatagtgactcattcagaaaggagagtgatgatgt |
44945482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 81 - 370
Target Start/End: Complemental strand, 44940981 - 44940692
Alignment:
| Q |
81 |
tgcttccttgttgcatttttatgcaatgttcagtctataaggtgctattgtcatgtcagttttttaatcaccgcacctacactcagagataaaaaggcat |
180 |
Q |
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|||||||||||||||||| |||| ||| | || |||||||| | |||| ||||| ||||| ||||||| ||||| |||||| | ||||||| | |
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| T |
44940981 |
tgcttccttgttgcatttctatgtaatatgcaatctataagatactatgcacatgtgagtttcttaatcaatacacctgcactcaatggcaaaaaggatt |
44940882 |
T |
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| Q |
181 |
atatggaatatattgctaagacattgaatcgtgctagtcactcttggtcccttggcttgcgagcattttacttatcatttcctctcttcctatggattta |
280 |
Q |
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||| |||||| |||| || |||||||| |||| ||| | |||||||| ||||| ||| | || || ||| ||| |||| || ||||||||||||| |
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| T |
44940881 |
ttatcgaatatgttgcaaaaacattgaaccgtggaagttattcttggtctcttggtttgagggctttctacacgtcaattccacttgtcctatggattta |
44940782 |
T |
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| Q |
281 |
tgggcctataccaatgtttacttgttgctgtttgacatctttcagtttgtactttttggatacaacaactagaatcacaagggatcttca |
370 |
Q |
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|||||| ||||| ||||||| ||||| || || ||||| || | ||||||||| ||||||||||| ||| |||||||||||||||||| |
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| T |
44940781 |
tgggcccatacccatgtttatttgttcttgcttcacatcatttattttgtacttcttggatacaaccactcaaatcacaagggatcttca |
44940692 |
T |
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