View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13944_high_11 (Length: 397)
Name: NF13944_high_11
Description: NF13944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13944_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 52 - 304
Target Start/End: Original strand, 5461329 - 5461581
Alignment:
| Q |
52 |
tcatggacgatggcagcccctctttctctacttttctccaacctaaaataatggaacagttgtaaggtaaaatagaaagtaataaatgtacaattaatga |
151 |
Q |
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| T |
5461329 |
tcatggacgatagcagcccctctttctctacttttctccaacctaaaataatggaacagttgtaaggtaaaatagaaagtaataaatgtacaattaatga |
5461428 |
T |
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| Q |
152 |
tgttatgtgaataatcagtaatggctgacattgctaaccaagtgtaacatgtctaattctactaggtccagcttcatgagttccttgaactctcggctgt |
251 |
Q |
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| T |
5461429 |
tgttatgtgaataatcagtaatggctgacattgctaaccaagtgtaacatgtctaattctactaggtccagcttcatgagttccttgaactctcggctgt |
5461528 |
T |
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| Q |
252 |
ctgttttcggtgtgcgcggtggttgaacttgtttattttccttttgaccttta |
304 |
Q |
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| T |
5461529 |
ctgttttcggtgtgcgcggtggttgaacttgtttattatccttttgaccttta |
5461581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 302 - 380
Target Start/End: Original strand, 5461604 - 5461682
Alignment:
| Q |
302 |
ttatggatagttgatgttctctttgcacaacgctcattctttgtttacttttcctttcatttcatttgctgccttgatg |
380 |
Q |
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| T |
5461604 |
ttatggatagttgatgttctctttgcacaacgctcattctttgtttacttttcctttcaattcatttgctgccttgatg |
5461682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 143
Target Start/End: Complemental strand, 17882689 - 17882641
Alignment:
| Q |
95 |
taaaataatggaacagttgtaaggtaaaatagaaagtaataaatgtaca |
143 |
Q |
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| T |
17882689 |
taaaataatgtaacagttgtaaggtaaaataaaaagaagtaaatgtaca |
17882641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 24866816 - 24866874
Alignment:
| Q |
86 |
tctccaacctaaaataatggaacagttgtaaggtaaaatagaaagtaataaatgtacaa |
144 |
Q |
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| T |
24866816 |
tctccaacctaaaataatgtaacagttgtaaggtaaaatagaaagtagtaaatgtacaa |
24866874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 84 - 144
Target Start/End: Original strand, 2248768 - 2248828
Alignment:
| Q |
84 |
tttctccaacctaaaataatggaacagttgtaaggtaaaatagaaagtaataaatgtacaa |
144 |
Q |
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| T |
2248768 |
tttctccaacctaaaataatgtaacagttgtaaggtaaaatcgaaagtagtaaatgtacaa |
2248828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 83 - 138
Target Start/End: Complemental strand, 14138536 - 14138482
Alignment:
| Q |
83 |
ttttctccaacctaaaataatggaacagttgtaaggtaaaatagaaagtaataaat |
138 |
Q |
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| T |
14138536 |
ttttctccaacctaaaata-tgtaacagttgtaaggtaacatagaaagtagtaaat |
14138482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 40801292 - 40801232
Alignment:
| Q |
84 |
tttctccaacctaaaataatggaacagttgtaaggtaaaatagaaagtaataaatgtacaa |
144 |
Q |
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| T |
40801292 |
tttctccaacctaaattaatgtaacagttgtaatgtaaaattgaaaggagtagatgtacaa |
40801232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 144
Target Start/End: Original strand, 18701685 - 18701745
Alignment:
| Q |
84 |
tttctccaacctaaaataatggaacagttgtaaggtaaaatagaaagtaataaatgtacaa |
144 |
Q |
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|||||||||| |||| ||||| ||||||||||| ||||||| ||||| | || |||||||| |
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| T |
18701685 |
tttctccaacgtaaattaatgtaacagttgtaatgtaaaattgaaaggagtagatgtacaa |
18701745 |
T |
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