View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13944_high_12 (Length: 361)
Name: NF13944_high_12
Description: NF13944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13944_high_12 |
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| [»] scaffold0026 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 158 - 289
Target Start/End: Complemental strand, 24609375 - 24609245
Alignment:
| Q |
158 |
tatagatatgtgtctaattcaggatgcacatgcattgttcgagctttaaaaaattgtgccactattataataaggcaaatgctaacatgtgtacagagga |
257 |
Q |
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| T |
24609375 |
tatagatatgtgtctaattcaggatgcacattcattgttcgagctttaaaaaactgtgccactattataataaggcaaatgctaacatgtgcacataggg |
24609276 |
T |
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| Q |
258 |
catatattaaggagtttaacataggaatattc |
289 |
Q |
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| T |
24609275 |
catatattaagaag-ttaacataggaatattc |
24609245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 20 - 156
Target Start/End: Complemental strand, 24609545 - 24609407
Alignment:
| Q |
20 |
ttctgattaataacacatctagggttggacat-gatacaatatatcaatatacgtgattacatttaattaattcactttttcaaac-ttttacttgtgcc |
117 |
Q |
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| T |
24609545 |
ttctgattgataacatatctgaggttggacatcgatacaatatatcaatatatgtggttacattcaattaattcactttttcaaactttttacttgtgcc |
24609446 |
T |
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| Q |
118 |
aacgtgtcaaaatgtctgggtatgtgtcggtgtttcata |
156 |
Q |
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| T |
24609445 |
aatgtatcaaaatgtccgtgtatgtgtcggtgtttcata |
24609407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 120
Target Start/End: Complemental strand, 34625675 - 34625622
Alignment:
| Q |
67 |
tatacgtgattacatttaattaattcactttttcaaacttttacttgtgccaac |
120 |
Q |
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| T |
34625675 |
tatacgtgattacgttcaattaattcattttttcaaactattacttgtgtcaac |
34625622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 72 - 107
Target Start/End: Complemental strand, 93565 - 93530
Alignment:
| Q |
72 |
gtgattacatttaattaattcactttttcaaacttt |
107 |
Q |
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| T |
93565 |
gtgattacatttaattaattcattttttcaaacttt |
93530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 72 - 115
Target Start/End: Complemental strand, 24362368 - 24362325
Alignment:
| Q |
72 |
gtgattacatttaattaattcactttttcaaacttttacttgtg |
115 |
Q |
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| T |
24362368 |
gtgattacattcaattaattcattttttcaaatttttacttgtg |
24362325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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