View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13944_high_13 (Length: 361)
Name: NF13944_high_13
Description: NF13944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13944_high_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 80 - 346
Target Start/End: Original strand, 37756876 - 37757142
Alignment:
| Q |
80 |
gaccctcacccaacccatataattccaaaaatccaaaacatgacaatccactccatgccaaattaataacaaggaaaagttaagtgcgtgtttactttac |
179 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
37756876 |
gaccctcacccaacccatataattccaaaaatccaaaacatgacaatccactccatgccaaattaataacaaggaaaagttaagtgcctgtttactttac |
37756975 |
T |
|
| Q |
180 |
tgttttcattttcatttcaactaataagagttaaatgactatcactatgttctgacagtgtaaaataattttacaccgtcatcgaatagaaattcatcat |
279 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37756976 |
tgttttcattttcatttcaactagtaagagttaaatgactatcactatgtactgacagtgtaaaataattttacaccgtcatcgaatagaaattcatcat |
37757075 |
T |
|
| Q |
280 |
cttctcatgtaggcttactttgtaaccatattttaaaaataactacaacatactctactattgtaac |
346 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37757076 |
cttctcatgtaggcttactttgtaaccatcttttaaaaataactacaacatactctactattgtaac |
37757142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 233 - 331
Target Start/End: Original strand, 47552834 - 47552932
Alignment:
| Q |
233 |
gacagtgtaaaataattttacaccgtcatcgaatagaaattcatcatcttctcatgtaggcttactttgtaaccatattttaaaaataactacaacata |
331 |
Q |
| |
|
|||||| ||||||| ||||||||||||||| ||||| || |||||||||| |||||||| |||||| |||| | |||| ||||||||||| ||||| |
|
|
| T |
47552834 |
gacagtataaaatagttttacaccgtcatccaataggaactcatcatcttactatgtaggcctactttataactgtcttttcaaaataactaccacata |
47552932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 280
Target Start/End: Complemental strand, 47549953 - 47549905
Alignment:
| Q |
232 |
tgacagtgtaaaataattttacaccgtcatcgaatagaaattcatcatc |
280 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||| ||| |||| |
|
|
| T |
47549953 |
tgacaatgtaaaataattttacaccgttttcgaatagaaactcaccatc |
47549905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University