View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13944_high_14 (Length: 333)
Name: NF13944_high_14
Description: NF13944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13944_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 47807000 - 47806684
Alignment:
| Q |
1 |
tcatcaatatgcttattgtctgtcgaacaatttttgttttggtcgtgattttcctttccagccgaatcaacagatctttccgcaatatgaaacttgagta |
100 |
Q |
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| T |
47807000 |
tcatcgatatgcttgttgtctgtcgaacaatttttgttttggtcgtgattttcctttccagccgaatcaacagatctttccgcaatatgaaacttgagta |
47806901 |
T |
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| Q |
101 |
ggggatatatcttgtactttgacatgactttctttttaaagattggaaacaacttatcgtcagggaagaattttttcttgtctttatgatgataaagatt |
200 |
Q |
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| T |
47806900 |
ggggatatatcttgtactttgacatgactttctttttaaagattggaaacaacttatcgtcagggaagaattttttcttgtctttatgatgataaagatt |
47806801 |
T |
|
| Q |
201 |
tttctctgtaatgtattcaaacatgagagattttacatcccttcgcatcattggttcggtttcatatctccctatggatgccaggaaactagagagaggt |
300 |
Q |
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| T |
47806800 |
tttctctgtaatgtattcaaacatgagagattttacatcccttcgcatcattggttcggtttcatatctccctatggatgccaggaaactagagagaggt |
47806701 |
T |
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| Q |
301 |
cctgatgcccatccaac |
317 |
Q |
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| T |
47806700 |
cctgatgcccatccaac |
47806684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 16 - 314
Target Start/End: Complemental strand, 47804441 - 47804143
Alignment:
| Q |
16 |
ttgtctgtcgaacaatttttgttttggtcgtgattttcctttccagccgaatcaacagatctttccgcaatatgaaacttgagtaggggatatatcttgt |
115 |
Q |
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||||||| |||||||||||| |||| |||||||||||||||| || |||||| | || ||| |||||| ||||||| |||||| | |||||||| |
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| T |
47804441 |
ttgtctgccgaacaattttttttttcatcgtgattttcctttctagatgaatcatctgaatttttcgcaatgtgaaactcgagtagagaatatatctgag |
47804342 |
T |
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| Q |
116 |
actttgacatgactttctttttaaagattggaaacaacttatcgtcagggaagaattttttcttgtctttatgatgataaagatttttctctgtaatgta |
215 |
Q |
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|||| ||| ||||||||||||| || ||||||||||| || ||||||| |||||| |||||||||| |||| |||||||||||||| ||||||| |
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| T |
47804341 |
acttcaacacagctttctttttaaatataggaaacaacttgtcatcagggaggaatttcctcttgtctttgggatggtaaagatttttctccttaatgta |
47804242 |
T |
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| Q |
216 |
ttcaaacatgagagattttacatcccttcgcatcattggttcggtttcatatctccctatggatgccaggaaactagagagaggtcctgatgcccatcc |
314 |
Q |
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| T |
47804241 |
ttcatatatgagagatcttattccccattgcatcattggttcggttttgtatctccctatggatgcaaggaagctagatagaggtcttgatgcccatcc |
47804143 |
T |
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