View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13944_high_16 (Length: 329)
Name: NF13944_high_16
Description: NF13944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13944_high_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 7560591 - 7560288
Alignment:
| Q |
1 |
taagagcaaaaacaaaatatcttgatatttaaaaagaa----aaatcatattacttagaatcattttaataatttcacctaagcgcattcacctaagtag |
96 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
7560591 |
taagagcaaaaacaaaatatcttgatatttaaaaaaaataaaaaatcatattacttagaatcattttaacaatttcacctaag--------------tag |
7560506 |
T |
|
| Q |
97 |
tttaaataagagacatactgttgttaagatagctcttcgagttgattggtgtcaatcgctagttgaacaatttaggatggaattttgacgatgatggttg |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
7560505 |
tttaaataagagacatactgttgttaagatagcttttcgagttgattggtgtcaatcgctagttgaacaatttaggatggaattttgactatgatggttg |
7560406 |
T |
|
| Q |
197 |
gaaatggcggcgtatgttattaacttgggatgaggaacaagtgaggaagtgttgtaatttattgtataacattttttgcatgtcaatgagcacgataagt |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
7560405 |
gaaatggcggcgtatgttattaacttgggatgaggaacaagtgagggagtgttataatttattgtataacattttttgcatgtcaatgaacacgataagt |
7560306 |
T |
|
| Q |
297 |
gggattgaaagttcaatc |
314 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
7560305 |
gggattgaaagttcaatc |
7560288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University