View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13944_high_4 (Length: 516)
Name: NF13944_high_4
Description: NF13944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13944_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 12 - 503
Target Start/End: Original strand, 27610219 - 27610710
Alignment:
| Q |
12 |
agagatgaagggaggagtttgacaacattgtttcattcgaagcaaatttgctacatttataaaattcttataagatttatctaaggacacttttatgttc |
111 |
Q |
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| T |
27610219 |
agagatgaagggaggagtttgacaacattgtttcattcgaagcaaatttgctacatttataaaattcttataagatttatctaaggacacttttatgttc |
27610318 |
T |
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| Q |
112 |
tttggcgttcattggggtacctcccagcttttagcaagttattatacttgcttagatgctttgaaggatcaactttcagaccatcgtggaccctgatttg |
211 |
Q |
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| T |
27610319 |
tttggcgttcattggggtacctcccagcttttagcaagttattatacttgcttagatgctttgaaggatcaactttcagaccatcgtggaccctgatttg |
27610418 |
T |
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| Q |
212 |
atcatttctctgatcaacatgcaccctgacgtgggaactctggggcaaaacattgttattattgtgatccatatagttcctttccatgtctctcacatat |
311 |
Q |
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| T |
27610419 |
atcatttctctgatcaacatgcaccctgacgtgggaactctggggcaaaacattgttattattgtgatccatatagttcctttccatgtctctcacatat |
27610518 |
T |
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| Q |
312 |
ctgctggatttcctcaattttttacttgtatgttgtggaggatagccttccttgggactggaaattttagctgctccttcaacgtactctgaaacaacaa |
411 |
Q |
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| T |
27610519 |
ctgctggatttcctcaattttttacttgtatgttgtggaggatagccttccttgggactggaaattttagctgctccttcaacgtactctgaaacaacaa |
27610618 |
T |
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| Q |
412 |
acatgatttacattatgaaaattttatctaaattttgattgttcatcatgatgacattatgaaaagattggctacatcatcaatgaaattat |
503 |
Q |
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| T |
27610619 |
acatgatttacattatgaaaattttatctaaattttgattgttcatcatgatgacattatgaaaagattggctacatcatcaatgaaattat |
27610710 |
T |
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