View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13944_high_5 (Length: 462)
Name: NF13944_high_5
Description: NF13944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13944_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 17 - 453
Target Start/End: Original strand, 7724497 - 7724933
Alignment:
| Q |
17 |
gttacggctactcctaagctcaatggaatagatctatgcagcgtggtttgggaacgaatagcaaattagatttcatcagtgacagtattcatgttcttga |
116 |
Q |
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| T |
7724497 |
gttacggctactcctaagctcaatggaatagatctatgcagcgtggtttgggaacgaatagcaaattagatttcatcagtgacagtattcatgttcttga |
7724596 |
T |
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| Q |
117 |
tcttcaggatctgaatcacaatgcttaggaaaagtgtaatcatttggtccaatgcttatagaatcattactctattagctgctcccattcatcttcaaca |
216 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
7724597 |
tcttcaggatctgaatcacaatgcttaggaaaggtgtaatcatttggtccaatgcttatagaatctttactctgttagctgctcccattcatcttcaaca |
7724696 |
T |
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| Q |
217 |
acaaaattctgataatgaatcaacnnnnnnnngtctttctttccaacataacataattaggatctttgatcccagataggtatcccaagttatccccaca |
316 |
Q |
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| T |
7724697 |
acaaaatcctgataatgaatcagcttttttttgtctttctttccaacataacataattaggatctttgatcccagataggtatcccaagttatccccaca |
7724796 |
T |
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| Q |
317 |
acttaagtcgtttcggcctgctttgacactatcctccagtcgataatgaaacatatgannnnnnnaccagagttggctacctcccacatgggtgattcca |
416 |
Q |
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| T |
7724797 |
acttaagtcgtttcggcctgctttgagactatcctcaagtcgataatgaaacatatgatttttttaccagagttggctacctcccacatgggtgattcca |
7724896 |
T |
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| Q |
417 |
caaatcaaaccttagttcttttcttggggagaataat |
453 |
Q |
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| T |
7724897 |
caaattaaaccttagttcttttcttggggagaataat |
7724933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 193 - 240
Target Start/End: Original strand, 7724415 - 7724462
Alignment:
| Q |
193 |
agctgctcccattcatcttcaacaacaaaattctgataatgaatcaac |
240 |
Q |
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| T |
7724415 |
agctgctcccgttcatcttcaacaacaaaatcctaataatgaatcaac |
7724462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 142
Target Start/End: Original strand, 20071496 - 20071536
Alignment:
| Q |
102 |
tattcatgttcttgatcttcaggatctgaatcacaatgctt |
142 |
Q |
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| T |
20071496 |
tattcttgttcctgatcttcatgatctgaatcacaatgctt |
20071536 |
T |
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