View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13944_high_8 (Length: 422)
Name: NF13944_high_8
Description: NF13944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13944_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 11 - 400
Target Start/End: Complemental strand, 40102165 - 40101776
Alignment:
| Q |
11 |
cataggaggtggtgcaattttaataaagaagaggtatgaagagaaacgccataagaaacgcgagaagcgtcagtcgtgctcaaaagatctagaaggaatc |
110 |
Q |
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| T |
40102165 |
cataggaggtggtgcaattttaataaagaagaggtatgaagagaaacgccataagaaacgcgggaagcgtcagtcgtgctcaaaagatctagaaggaatc |
40102066 |
T |
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| Q |
111 |
tatgataagatgctcggcttatcattaggtggtgaagagctgccttatgatctattagaggagcagctgggtggtctaagtcttcatttgaatgatgagg |
210 |
Q |
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| T |
40102065 |
tatgataagatgctcggcttatcattaggtggtgaagagctgccttatgatctattagaggagcagctgagtggtctaagtcttcatttgaatgatgagg |
40101966 |
T |
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| Q |
211 |
aatctgaggcgaagagtaagaaggtgaggaggataaccgattgaattaacaaaattcacttctatcctgacaagctgatatagtaatttagggaattttg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40101965 |
aatctgaggcgaagagtaagaaggtgaggaggataaccgattgaattaacaaaattcacttctatcctgacaagctgatatagtaatttagggaattttg |
40101866 |
T |
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| Q |
311 |
gcttttgtttatgtctaggccatcgtttttctgtttaggttgttttaatttgcaacatttcttgatgcactttttggattatgttatgtt |
400 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
40101865 |
gcttttgtttatgtctaggctatcgtttttctgtttaggttgttttaatttgcaacatctcttgatgcactttttggattatgttatgtt |
40101776 |
T |
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