View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13944_low_1 (Length: 829)

Name: NF13944_low_1
Description: NF13944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13944_low_1
NF13944_low_1
[»] chr7 (14 HSPs)
chr7 (158-727)||(38360422-38360975)
chr7 (1-149)||(38361036-38361184)
chr7 (222-355)||(31330390-31330525)
chr7 (217-354)||(36482001-36482139)
chr7 (69-119)||(38360970-38361020)
chr7 (184-355)||(4958195-4958372)
chr7 (214-347)||(37698476-37698610)
chr7 (184-351)||(5513844-5514013)
chr7 (222-355)||(47841415-47841550)
chr7 (217-371)||(23156218-23156373)
chr7 (217-355)||(36657882-36658021)
chr7 (187-267)||(23802216-23802296)
chr7 (203-271)||(43302197-43302265)
chr7 (217-355)||(44441582-44441722)
[»] chr4 (22 HSPs)
chr4 (211-355)||(23359087-23359232)
chr4 (187-409)||(49210988-49211213)
chr4 (198-299)||(2574100-2574201)
chr4 (222-355)||(10180607-10180741)
chr4 (203-355)||(35382357-35382510)
chr4 (216-310)||(30865881-30865975)
chr4 (232-355)||(22628474-22628599)
chr4 (217-355)||(39629187-39629326)
chr4 (230-355)||(12447422-12447549)
chr4 (227-355)||(35308978-35309108)
chr4 (222-301)||(39055158-39055237)
chr4 (228-355)||(53096601-53096730)
chr4 (217-355)||(52199794-52199933)
chr4 (222-355)||(35144384-35144518)
chr4 (203-271)||(43968758-43968826)
chr4 (317-355)||(23607446-23607484)
chr4 (209-271)||(53779432-53779494)
chr4 (318-351)||(822377-822410)
chr4 (318-351)||(18743278-18743311)
chr4 (222-271)||(24030621-24030670)
chr4 (318-355)||(42426884-42426921)
chr4 (210-271)||(45803970-45804031)
[»] chr8 (26 HSPs)
chr8 (220-355)||(23036788-23036925)
chr8 (203-355)||(6519037-6519189)
chr8 (203-360)||(9604490-9604649)
chr8 (184-360)||(28540628-28540807)
chr8 (184-360)||(28557203-28557382)
chr8 (203-355)||(2603066-2603219)
chr8 (221-355)||(18806562-18806697)
chr8 (203-301)||(9134128-9134226)
chr8 (222-355)||(13629030-13629165)
chr8 (222-355)||(13729442-13729577)
chr8 (184-271)||(28575357-28575445)
chr8 (198-355)||(1155130-1155292)
chr8 (184-350)||(8673597-8673766)
chr8 (252-355)||(30714042-30714147)
chr8 (252-355)||(30721819-30721924)
chr8 (156-355)||(38937722-38937923)
chr8 (222-371)||(3628225-3628374)
chr8 (184-271)||(28562266-28562354)
chr8 (184-271)||(28567764-28567852)
chr8 (286-355)||(35893440-35893511)
chr8 (165-271)||(6427181-6427288)
chr8 (210-244)||(14426226-14426260)
chr8 (324-353)||(4325564-4325593)
chr8 (217-290)||(5139735-5139808)
chr8 (318-355)||(31128550-31128587)
chr8 (318-371)||(36815818-36815871)
[»] chr6 (8 HSPs)
chr6 (197-355)||(387695-387856)
chr6 (203-355)||(32658419-32658572)
chr6 (252-355)||(31743554-31743659)
chr6 (184-355)||(7693916-7694090)
chr6 (215-296)||(6988165-6988246)
chr6 (217-351)||(32977370-32977505)
chr6 (318-353)||(22281763-22281798)
chr6 (199-269)||(9491836-9491906)
[»] chr2 (12 HSPs)
chr2 (187-355)||(32887597-32887765)
chr2 (217-355)||(30465252-30465392)
chr2 (198-355)||(11921916-11922074)
chr2 (252-355)||(41264967-41265070)
chr2 (318-355)||(9583235-9583272)
chr2 (184-271)||(5038669-5038756)
chr2 (252-348)||(18970022-18970120)
chr2 (321-355)||(6710865-6710899)
chr2 (198-355)||(26312445-26312601)
chr2 (222-294)||(13022780-13022852)
chr2 (198-314)||(44887276-44887392)
chr2 (328-389)||(44887048-44887109)
[»] chr1 (15 HSPs)
chr1 (216-355)||(43822766-43822906)
chr1 (203-355)||(42831622-42831776)
chr1 (216-355)||(13984028-13984168)
chr1 (203-355)||(23333737-23333890)
chr1 (201-355)||(11241472-11241628)
chr1 (233-351)||(43506265-43506385)
chr1 (241-352)||(38118864-38118976)
chr1 (198-350)||(38600961-38601113)
chr1 (318-355)||(24555826-24555863)
chr1 (198-348)||(44665316-44665468)
chr1 (319-353)||(32851755-32851789)
chr1 (222-300)||(51263186-51263264)
chr1 (318-355)||(27544465-27544502)
chr1 (322-355)||(38902061-38902094)
chr1 (318-355)||(42483700-42483737)
[»] chr5 (9 HSPs)
chr5 (259-355)||(35463220-35463319)
chr5 (210-368)||(1309743-1309902)
chr5 (217-355)||(2375539-2375678)
chr5 (222-301)||(6761417-6761496)
chr5 (187-355)||(41520855-41521025)
chr5 (220-355)||(26675473-26675609)
chr5 (220-355)||(26947081-26947217)
chr5 (283-352)||(42320966-42321037)
chr5 (319-352)||(41357821-41357854)
[»] scaffold0040 (1 HSPs)
scaffold0040 (215-355)||(55771-55909)
[»] chr3 (10 HSPs)
chr3 (222-299)||(36902374-36902451)
chr3 (228-355)||(30595074-30595203)
chr3 (318-351)||(29950783-29950816)
chr3 (318-351)||(29999937-29999970)
chr3 (217-360)||(36277749-36277898)
chr3 (217-271)||(46006156-46006210)
chr3 (184-350)||(52995651-52995819)
chr3 (198-271)||(26085039-26085112)
chr3 (292-355)||(40242178-40242243)
chr3 (317-366)||(40861214-40861263)
[»] scaffold0036 (1 HSPs)
scaffold0036 (317-360)||(63643-63686)


Alignment Details
Target: chr7 (Bit Score: 356; Significance: 0; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 158 - 727
Target Start/End: Complemental strand, 38360975 - 38360422
Alignment:
Q  158 tttagaggtcttataagatcgaaagcctcacttaagacatcaatcttaagctggatccacactcttttgatattaaaaaattaaaatgtgatagtatata 257  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  38360975 tttagaggtcttaaaagatccaaagcctcacttaagacatcaatcttaagctggatccacactcttttgatattaaaaaattgaaatgtgatagtatata 38360876  T
Q  258 gttattgatagttggtcagtgaatttcatttaaaaaatttgtgtaaaatgttgggttgaagattgagtgcttattagatactactattaaaaaattatga 357  Q
    |||||||||||||||| |||||||| |||||||||||||||||| | ||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  38360875 gttattgatagttggtaagtgaattccatttaaaaaatttgtgtgagatgttggattggagattgagtgcttattagatactactattaaaaaattatga 38360776  T
Q  358 attgatgatatgtaaatttaaaacttatttaagtgcccaaaaatgtatgtctactactaaaaagtttagagatagcgaaagttgaatacaccactttgtg 457  Q
    ||   |||||||||||||||||||||||| |||| || ||||||||||              |||||||||| |||||||||||||||||| ||||||||    
T  38360775 atcagtgatatgtaaatttaaaacttattcaagtccctaaaaatgtat--------------agtttagagaaagcgaaagttgaatacacaactttgtg 38360690  T
Q  458 cggatgaaaactccttaccatacaagtcagctaaataaagaataaaaatttgctattgagaaacttttcataattgtgaaaatgaaataaacttaatggt 557  Q
     ||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  38360689 tggatgaaaactccttaccatataagtcagctaactaaagaataaaaatttgctactgagaaacttttcataattgtgaaaatgaactaaacttaatggt 38360590  T
Q  558 atgattgaacgtgcagccacggttcactgctgggctctgcaaagaacatatttatacaatggagnnnnnnnnnnnnnnnnnnnnnngcatattgattctt 657  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||                      ||||||||||||||    
T  38360589 atgattgaacgtgcagccacggttcactcctgggctctgcaaagaacatatttatacaatggag--ttttttttttttaaaaaaaagcatattgattctt 38360492  T
Q  658 ggttgagaaagaaaactacaatatatttaattaacgaattttatggacattaaaatataacaaaatgtaa 727  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  38360491 ggttgagaaagaaaactacaatatatttaattaacgaattttctggacattaaaatataacaaaatgtaa 38360422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 38361184 - 38361036
Alignment:
Q  1 caaaagggtcttataattaaggacgaagagttcgtaccatcaacacaaatcttaacactcaaagagtgttaatacaggtacttagaccatcttcaatgag 100  Q
    |||||| |||||||||||||||||  ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  38361184 caaaagagtcttataattaaggacagagagtacataccatcaacacaaatcttaacactcaaagagtgttaatacaggtacttagaccatcttcaacgag 38361085  T
Q  101 acgatcttaaacatttagatccagtgcttattaagtattctcattcaga 149  Q
    ||||||||||||||||||||| | | |||||||||||||||||||||||    
T  38361084 acgatcttaaacatttagatctaatacttattaagtattctcattcaga 38361036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 222 - 355
Target Start/End: Original strand, 31330390 - 31330525
Alignment:
Q  222 ttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatttcatttaaaaaatttgtgtaaaatgttgggttgaag--a 319  Q
    |||| ||||||||||||| |||||| ||  |||||| ||||||||||||| | |||   | |||||||| |||||||||| ||||||||||||| ||  |    
T  31330390 ttttaatattaaaaaattgaaatgtaatgatatatacttattgatagttgattagtacgtctcatttaagaaatttgtgtgaaatgttgggttggaggga 31330489  T
Q  320 ttgagtgcttattagatactactattaaaaaattat 355  Q
    ||||||||||||||| |||||| |||||||||||||    
T  31330490 ttgagtgcttattaggtactaccattaaaaaattat 31330525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 217 - 354
Target Start/End: Complemental strand, 36482139 - 36482001
Alignment:
Q  217 cactcttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatttcatttaaaaaatttgtgtaaaatgttgggttga 316  Q
    ||||||||| ||||||||||||| |||| | ||  |||| ||||||||||||||| | ||||||| |||||||| || ||||||| | || | || | ||    
T  36482139 cactcttttaatattaaaaaattgaaatataattatataaagttattgatagttgattagtgaatctcatttaagaactttgtgtgatatctgggttaga 36482040  T
Q  317 -agattgagtgcttattagatactactattaaaaaatta 354  Q
      |||||||||||||||| ||||||||||||||| ||||    
T  36482039 gtgattgagtgcttattaaatactactattaaaatatta 36482001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 38361020 - 38360970
Alignment:
Q  69 ttaatacaggtacttagaccatcttcaatgagacgatcttaaacatttaga 119  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  38361020 ttaatacaggtacttagaccatcttcaatgagacgatcttaaatatttaga 38360970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 184 - 355
Target Start/End: Original strand, 4958195 - 4958372
Alignment:
Q  184 ctcacttaagaca-tcaatcttaagctggatccacactcttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatt 282  Q
    ||||||||||||  || ||||||||  ||||||||||  |||| ||||||||||||| | |||| ||  |||| |||| |||||||||| |  |||  ||    
T  4958195 ctcacttaagaccctccatcttaagtgggatccacacctttttaatattaaaaaattgatatgtaatgatataaagttgttgatagttgatttgtgggtt 4958294  T
Q  283 tcatttaaaaaatttgtgtaaaatgttg---ggttgaag--attgagtgcttattagatactactattaaaaaattat 355  Q
    |||||||| ||| |||||| | ||||||   ||||| ||  |||||||| ||||||||||||||||||||||||||||    
T  4958295 tcatttaagaaagttgtgtgagatgttgttcggttggagggattgagtgtttattagatactactattaaaaaattat 4958372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 214 - 347
Target Start/End: Original strand, 37698476 - 37698610
Alignment:
Q  214 ccacactcttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatttcatttaaaaaatttgtgtaaaatgttgggt 313  Q
    |||||||||||| ||||||||||||||||||||  |  |||| |||| |||||||||  | ||||  |||||||||| || ||||||| | || ||||||    
T  37698476 ccacactcttttaatattaaaaaattaaaatgtagtgatataaagttgttgatagtttattagtgggtttcatttaagaattttgtgtgagat-ttgggt 37698574  T
Q  314 tgaa--gattgagtgcttattagatactactattaa 347  Q
    || |  ||||||||||||||||| ||||||||||||    
T  37698575 tggagggattgagtgcttattaggtactactattaa 37698610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 184 - 351
Target Start/End: Complemental strand, 5514013 - 5513844
Alignment:
Q  184 ctcacttaagacatcaatcttaagctggatccacactcttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaattt 283  Q
    ||||||||||||  |||||||||||  ||  ||||||||||| |||| |||||||| |||||| ||  |||| |||||||||| || | | ||||| | |    
T  5514013 ctcacttaagaccccaatcttaagcgagacacacactcttttaatataaaaaaattgaaatgtaattatataaagttattgatggtcgattagtgagtct 5513914  T
Q  284 catttaaaaaatttgtgtaaaatgttgggttgaa--gattgagtgcttattagatactactattaaaaaa 351  Q
    ||||||||||||||| || | ||   |||||| |  |||||||  ||||||||||| |||||||||||||    
T  5513913 catttaaaaaatttgcgtgagatacggggttggagggattgagaacttattagatattactattaaaaaa 5513844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 222 - 355
Target Start/End: Complemental strand, 47841550 - 47841415
Alignment:
Q  222 ttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatttcatttaaaaaatttgtgtaaaatgttgggttgaa--ga 319  Q
    |||| ||||||||||||| | ||||||| ||||| ||||||||||||||| |  |||| | |||||||| || ||| ||| | ||| | ||||| |  ||    
T  47841550 ttttaatattaaaaaattgatatgtgatggtataaagttattgatagttgatttgtgagtctcatttaagaactttatgtgagatgcttggttggaggga 47841451  T
Q  320 ttgagtgcttattagatactactattaaaaaattat 355  Q
    |||||| ||||||| |||||||||||| ||||||||    
T  47841450 ttgagtacttattaaatactactattacaaaattat 47841415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 217 - 371
Target Start/End: Complemental strand, 23156373 - 23156218
Alignment:
Q  217 cactcttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatttcatttaaaaaatttgtgtaaaatgttgggttga 316  Q
    ||||||||| ||||||||||||||||||||  |  |||| ||||||||||||||| | | ||  | |||||||| || ||||||| | || | || | ||    
T  23156373 cactcttttaatattaaaaaattaaaatgtagtgatataaagttattgatagttgattaatgggtctcatttaagaactttgtgtgagatctaggttgga 23156274  T
Q  317 -agattgagtgcttattagatactactattaaaaaattatgaattgatgatatgta 371  Q
      |||| |||||||||||| ||||||||||| |||| ||| |||||||||| ||||    
T  23156273 gggattaagtgcttattagctactactattataaaactataaattgatgatgtgta 23156218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 217 - 355
Target Start/End: Complemental strand, 36658021 - 36657882
Alignment:
Q  217 cactcttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatttcatttaaaaaatttgtgtaaaatgttgggttga 316  Q
    |||| |||| ||||||||| |||||||| | || ||||| | ||||||||||||| | ||||  |  ||||||| || ||||||| | || | ||||||     
T  36658021 cactattttaatattaaaatattaaaatataatggtataaaattattgatagttgattagtgggtcccatttaagaactttgtgtgagatct-gggttgg 36657923  T
Q  317 ag--attgagtgcttattagatactactattaaaaaattat 355  Q
    ||  ||||||||||||||||||| |||||||||||||||||    
T  36657922 agtgattgagtgcttattagatagtactattaaaaaattat 36657882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 267
Target Start/End: Complemental strand, 23802296 - 23802216
Alignment:
Q  187 acttaagacatcaatcttaagctggatccacactcttttgatattaaaaaattaaaatgtgatagtatatagttattgata 267  Q
    ||||||||| |||||||||||| |||| ||||||||||  ||||||||||||| |||||| ||  |||| ||| |||||||    
T  23802296 acttaagacctcaatcttaagcaggattcacactctttcaatattaaaaaattgaaatgtaatgatataaagtaattgata 23802216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 271
Target Start/End: Complemental strand, 43302265 - 43302197
Alignment:
Q  203 ttaagctggatccacactcttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttg 271  Q
    |||||| |||||||||||||||| ||||||||||||| |||| | ||  |||| |||||||||||||||    
T  43302265 ttaagcgggatccacactcttttaatattaaaaaattgaaatataatgatataaagttattgatagttg 43302197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 355
Target Start/End: Original strand, 44441582 - 44441722
Alignment:
Q  217 cactcttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatttcatttaaaaaatttgtgtaaaatgttgggttga 316  Q
    ||||||||| ||||||||||||| || ||| ||  |||  |||| |||||||||| | ||||  | |||||||| |||||| ||| | ||| |||||||     
T  44441582 cactcttttaatattaaaaaattgaagtgtaatgatatccagttgttgatagttgattagtgggtctcatttaagaaatttttgtgagatgctgggttgg 44441681  T
Q  317 ag--attgagtgcttattagatactactattaaaaaattat 355  Q
    ||  ||||||| |||||||| ||||||  ||||||||||||    
T  44441682 agatattgagttcttattaggtactaccgttaaaaaattat 44441722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 6e-24; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 211 - 355
Target Start/End: Original strand, 23359087 - 23359232
Alignment:
Q  211 gatccacactcttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatttcatttaaaaaatttgtgtaaaatgttg 310  Q
    ||||||||||||||| ||||||||||||| |||| | ||| |||| ||||||||||||||| |  ||| || |||||||| || ||||||| | || | |    
T  23359087 gatccacactcttttaatattaaaaaattgaaatattataatataaagttattgatagttgatttgtggatctcatttaagaactttgtgtgagatctag 23359186  T
Q  311 ggttga-agattgagtgcttattagatactactattaaaaaattat 355  Q
    | | ||  ||||||||||||||||||||||||||||||||||||||    
T  23359187 gttggagtgattgagtgcttattagatactactattaaaaaattat 23359232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 187 - 409
Target Start/End: Original strand, 49210988 - 49211213
Alignment:
Q  187 acttaagacatcaatcttaagctggatccacactcttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatttcat 286  Q
    ||||||||| ||| | |||||| |||||| | ||||||| |||||||||||||||||||| ||  |||| ||||||||||| ||| | | ||  | ||||    
T  49210988 acttaagacctcatttttaagcgggatcctcgctcttttaatattaaaaaattaaaatgtaatgatataaagttattgataattgattaatgggtctcat 49211087  T
Q  287 ttaaaaaatttgtgtaaaatgttgggttgaa--gattgagtgcttattagatactactatt-aaaaaattatgaattgatgatatgtaaatttaaaactt 383  Q
    ||||  ||||| ||| | ||| | ||||| |  ||| |||| ||||||||||||||||||| |||||||||| |||  |||||||||| |  | |||| |    
T  49211088 ttaaggaatttttgtgagatgctaggttggagggatagagttcttattagatactactattaaaaaaattataaataaatgatatgtacacgtgaaacct 49211187  T
Q  384 atttaagtgcccaaaaatgtatgtct 409  Q
    |||||||| | |||||||| ||||||    
T  49211188 atttaagtactcaaaaatgaatgtct 49211213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 198 - 299
Target Start/End: Complemental strand, 2574201 - 2574100
Alignment:
Q  198 caatcttaagctggatccacactcttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatttcatttaaaaaattt 297  Q
    ||||||||||| |||||||||||||||| | ||||||||||| |||||| ||  |||| ||||||| ||||||| | ||||||||  |||||| ||||||    
T  2574201 caatcttaagcgggatccacactcttttaacattaaaaaattgaaatgtaatgatataaagttattaatagttgattagtgaattctatttaagaaattt 2574102  T
Q  298 gt 299  Q
    ||    
T  2574101 gt 2574100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 222 - 355
Target Start/End: Complemental strand, 10180741 - 10180607
Alignment:
Q  222 ttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatttcatttaaaaaatttgtgtaaaatgttgggttgaag--a 319  Q
    |||| ||||||||||||| | |||| ||  |||| ||||||||||||||| |  ||| || |||||||| |||||||||||| ||| | ||||| ||  |    
T  10180741 ttttaatattaaaaaattgatatgtaatgatataaagttattgatagttgatt-gtggatctcatttaagaaatttgtgtaagatgctaggttggaggca 10180643  T
Q  320 ttgagtgcttattagatactactattaaaaaattat 355  Q
    |||||| |||||||| ||||||||||||||||||||    
T  10180642 ttgagttcttattaggtactactattaaaaaattat 10180607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 203 - 355
Target Start/End: Complemental strand, 35382510 - 35382357
Alignment:
Q  203 ttaagctggatccacactcttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatttcatttaaaaaatttgtgta 302  Q
    |||||| ||| |||||||||||| ||||| ||||||| |||| | ||  |||| ||||| ||||||||| | ||||  | |||||||| || |||||||     
T  35382510 ttaagcgggacccacactcttttaatatttaaaaattgaaatataatgatataaagttagtgatagttgattagtgtgtctcatttaagaactttgtgtg 35382411  T
Q  303 aaatgttgggttgaa--gattgagtgcttattagatactactattaaaaaattat 355  Q
    ||||  ||||||| |  |||||| |||||||||  ||||||||||||||||||||    
T  35382410 aaat-ctgggttggagtgattgaatgcttattatgtactactattaaaaaattat 35382357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 216 - 310
Target Start/End: Original strand, 30865881 - 30865975
Alignment:
Q  216 acactcttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatttcatttaaaaaatttgtgtaaaatgttg 310  Q
    ||||| |||| ||||||||||||| |||||| ||  |||| ||||||||||||||| | ||||| | |||||||| |||||| ||| ||||||||    
T  30865881 acacttttttaatattaaaaaattgaaatgtaatgatataaagttattgatagttgattagtgagtctcatttaagaaatttatgtgaaatgttg 30865975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 232 - 355
Target Start/End: Original strand, 22628474 - 22628599
Alignment:
Q  232 aaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatttcatttaaaaaatttgtgtaaaatgttgggt-tga-agattgagtgctt 329  Q
    ||||||||||||||| ||  |||| ||||||||||||||| | ||||| |  ||||||||||||||||||   || ||||||  || |||||||||| ||    
T  22628474 aaaaaattaaaatgtaatgatataaagttattgatagttgattagtgagtcccatttaaaaaatttgtgtgtgatattgggtcagagagattgagtgttt 22628573  T
Q  330 attagatactactattaaaaaattat 355  Q
    ||||  |||| |||||||||||||||    
T  22628574 attatgtactcctattaaaaaattat 22628599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 217 - 355
Target Start/End: Complemental strand, 39629326 - 39629187
Alignment:
Q  217 cactcttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatttcatttaaaaaatttgtgtaaaatgttgggttga 316  Q
    ||||||||| ||||||||||||| |||  | ||  |||| | ||||||||||||| | |||| || |||||||| || |||||||   || | ||||||     
T  39629326 cactcttttaatattaaaaaattgaaaaataatgatataaaattattgatagttgtttagtggatctcatttaagaactttgtgtgtgatct-gggttgg 39629228  T
Q  317 ag--attgagtgcttattagatactactattaaaaaattat 355  Q
    ||  ||| |||||||||||||||||||||||||||||||||    
T  39629227 agtgatttagtgcttattagatactactattaaaaaattat 39629187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 230 - 355
Target Start/End: Original strand, 12447422 - 12447549
Alignment:
Q  230 ttaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatttcatttaaaaaatttgtgtaaaatgttgggttgaa--gattgagtgc 327  Q
    |||||||||| |||||| ||  |||| ||||||||||||||| | ||||  | | |||||| |||||| ||| | ||| |||||| ||  |||||||| |    
T  12447422 ttaaaaaattgaaatgtaatgatataaagttattgatagttgattagtgggtcttatttaagaaatttttgtgagatgctgggttaaaaggattgagttc 12447521  T
Q  328 ttattagatactactattaaaaaattat 355  Q
    |||||| | |||||||||||||||||||    
T  12447522 ttattatagactactattaaaaaattat 12447549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 227 - 355
Target Start/End: Complemental strand, 35309108 - 35308978
Alignment:
Q  227 atattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatttcatttaaaaaatttgtgtaaaatgttgggttgaa--gattgag 324  Q
    |||||||||||||||||| | ||  |||| ||||||||||||||| | ||||| |  ||||||||||| |||||| |  || | || |  |  |||||||    
T  35309108 atattaaaaaattaaaatataatgatataaagttattgatagttgattagtgagtcccatttaaaaaaattgtgtgagttgctaggctagagggattgag 35309009  T
Q  325 tgcttattagatactactattaaaaaattat 355  Q
    | ||||||||||| |||||||||||||||||    
T  35309008 tacttattagatattactattaaaaaattat 35308978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 222 - 301
Target Start/End: Original strand, 39055158 - 39055237
Alignment:
Q  222 ttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatttcatttaaaaaatttgtgt 301  Q
    |||| |||||||||||||||||||| ||  |||| ||||||||||||||| | ||||  |||||||||| || |||||||    
T  39055158 ttttaatattaaaaaattaaaatgtaatgatataaagttattgatagttgattagtgggtttcatttaagaactttgtgt 39055237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 228 - 355
Target Start/End: Complemental strand, 53096730 - 53096601
Alignment:
Q  228 tattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatttcatttaaaaaatttgtgtaaaatgttgggttgaag--attgagt 325  Q
    ||||||||| || | |||| ||| |||| ||||||||||||||| | |||   |  ||||||| |||||||||| | |||||||||| |||  |||||||    
T  53096730 tattaaaaatttgatatgtaataatataaagttattgatagttgattagttggtcccatttaagaaatttgtgtgagatgttgggttaaagggattgagt 53096631  T
Q  326 gcttattagatactactattaaaaaattat 355  Q
     |||||||  || |||||||||||||||||    
T  53096630 tcttattaagtattactattaaaaaattat 53096601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 355
Target Start/End: Original strand, 52199794 - 52199933
Alignment:
Q  217 cactcttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatttcatttaaaaaatttgtgtaaaatgttgggttga 316  Q
    ||||||||| ||||||||||||| |||| | ||  |||||| ||||||||||| | | ||||  |  ||||||| || ||||||| | || | ||||||     
T  52199794 cactcttttaatattaaaaaattgaaatataatgatatataattattgatagtggattagtgggtcccatttaagaactttgtgtgagatct-gggttgg 52199892  T
Q  317 ag--attgagtgcttattagatactactattaaaaaattat 355  Q
    ||  ||||| |||||||||| ||||||||||||||||||||    
T  52199893 agtgattgaatgcttattaggtactactattaaaaaattat 52199933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 222 - 355
Target Start/End: Original strand, 35144384 - 35144518
Alignment:
Q  222 ttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatttcatttaaaaaatttgtgtaaaatgttgggttgaag--a 319  Q
    |||| ||||||||||||| |||||| || ||||| | ||||| || |||  |||||| |||  |||||| |||||||| | | || | |||||| ||  |    
T  35144384 ttttaatattaaaaaattgaaatgtaatggtataaaattattaatggtttatcagtggattctatttaagaaatttgtatgagatct-gggttggaggga 35144482  T
Q  320 ttgagtgcttattagatactactattaaaaaattat 355  Q
    |||| ||||||||||||||||||| |||||||||||    
T  35144483 ttgaatgcttattagatactactactaaaaaattat 35144518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 271
Target Start/End: Original strand, 43968758 - 43968826
Alignment:
Q  203 ttaagctggatccacactcttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttg 271  Q
    |||||| ||| |||||||||||| |||||||||||||||||| |  |  |||| |||||||||||||||    
T  43968758 ttaagcaggacccacactcttttaatattaaaaaattaaaatatagtgatataaagttattgatagttg 43968826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 317 - 355
Target Start/End: Original strand, 23607446 - 23607484
Alignment:
Q  317 agattgagtgcttattagatactactattaaaaaattat 355  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  23607446 agattgagttcttaatagatactactattaaaaaattat 23607484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 53779494 - 53779432
Alignment:
Q  209 tggatccacactcttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttg 271  Q
    |||||||||||| |||| |||||||||||||||||| | ||  |||  |||||||||||||||    
T  53779494 tggatccacacttttttaatattaaaaaattaaaatataatgatattaagttattgatagttg 53779432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 318 - 351
Target Start/End: Complemental strand, 822410 - 822377
Alignment:
Q  318 gattgagtgcttattagatactactattaaaaaa 351  Q
    |||||||| |||||||||||||||||||||||||    
T  822410 gattgagtacttattagatactactattaaaaaa 822377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 318 - 351
Target Start/End: Complemental strand, 18743311 - 18743278
Alignment:
Q  318 gattgagtgcttattagatactactattaaaaaa 351  Q
    ||||||||||||||||| ||||||||||||||||    
T  18743311 gattgagtgcttattaggtactactattaaaaaa 18743278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 222 - 271
Target Start/End: Original strand, 24030621 - 24030670
Alignment:
Q  222 ttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttg 271  Q
    |||| |||||||||||||||||||| ||| | || |||||||||||||||    
T  24030621 ttttaatattaaaaaattaaaatgtaataatgtaaagttattgatagttg 24030670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 318 - 355
Target Start/End: Complemental strand, 42426921 - 42426884
Alignment:
Q  318 gattgagtgcttattagatactactattaaaaaattat 355  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  42426921 gattgagtttttattagatactactattaaaaaattat 42426884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 271
Target Start/End: Original strand, 45803970 - 45804031
Alignment:
Q  210 ggatccacactcttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttg 271  Q
    ||||||||||| |||| |||||| |||| ||| | || || |||||||||||||||||||||    
T  45803970 ggatccacactattttaatattagaaaactaatacgtaattgtatatagttattgatagttg 45804031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 4e-22; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 220 - 355
Target Start/End: Original strand, 23036788 - 23036925
Alignment:
Q  220 tcttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatttcatttaaaaaatttgtgtaaaatgttgggttga--a 317  Q
    |||||| ||||||||||||| | |||| ||  |||| | ||||||||||||| |||||| |||||  |||| |||||||||| | ||| ||||||||  |    
T  23036788 tcttttaatattaaaaaattgatatgtaatgatataaaattattgatagttgatcagtggatttctattaagaaatttgtgtgagatgctgggttgaaga 23036887  T
Q  318 gattgagtgcttattagatactactattaaaaaattat 355  Q
    |||||||| ||||||||||||||||||| |||||||||    
T  23036888 gattgagttcttattagatactactattgaaaaattat 23036925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 203 - 355
Target Start/End: Complemental strand, 6519189 - 6519037
Alignment:
Q  203 ttaagctggatccacactcttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatttcatttaaaaaatttgtgta 302  Q
    |||||| |||||| |||||||||  |||||||||||| |||||| ||  |||| ||||||||||||||| | ||||| | |||||||| |||||||||      
T  6519189 ttaagcgggatccgcactcttttagtattaaaaaattgaaatgtaatgatataaagttattgatagttgattagtgagtctcatttaagaaatttgtg-- 6519092  T
Q  303 aaatgttgggttg--aagattgagtgcttattagatactactattaaaaaattat 355  Q
    | ||| |||||||   ||||||| | |||||||| ||||||||||||||||||||    
T  6519091 agatgctgggttggagagattgaattcttattaggtactactattaaaaaattat 6519037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 203 - 360
Target Start/End: Complemental strand, 9604649 - 9604490
Alignment:
Q  203 ttaagctggatccacactcttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatttcatttaaaaaatttgtgta 302  Q
    |||||| |||||| ||||||||| || |||||||||| |||| | ||  |||| ||||||||||||||| | ||||  || ||||||| |||||| | |     
T  9604649 ttaagcgggatcctcactcttttaatgttaaaaaattgaaatctaatgatataaagttattgatagttgattagtgggttccatttaagaaatttttatg 9604550  T
Q  303 aaatgttgggttgaa--gattgagtgcttattagatactactattaaaaaattatgaatt 360  Q
    | ||| ||||||| |  |||||||| |||||||||||||| |||||||||||||| ||||    
T  9604549 agatgctgggttggatggattgagttcttattagatactattattaaaaaattataaatt 9604490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 184 - 360
Target Start/End: Original strand, 28540628 - 28540807
Alignment:
Q  184 ctcacttaaga-catcaatcttaagctggatccacactcttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatt 282  Q
    ||||||||||| | ||||||||| || |||  ||||||||||| ||||||||||||| |||||| ||  |||| |  |||||||||||| | ||||| |     
T  28540628 ctcacttaagaacctcaatcttatgcgggactcacactcttttaatattaaaaaattgaaatgtaatgatataaaactattgatagttgattagtgagtc 28540727  T
Q  283 tcatttaaaaaatttgtgtaaaatgttgggttgaag--attgagtgcttattagatactactattaaaaaattatgaatt 360  Q
    || ||||| |||||||||| | ||| ||||||| ||  ||||| | |||||||  |||||||||||||||||||| ||||    
T  28540728 tcttttaagaaatttgtgtgagatgctgggttggagtaattgaatacttattaagtactactattaaaaaattataaatt 28540807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 184 - 360
Target Start/End: Original strand, 28557203 - 28557382
Alignment:
Q  184 ctcacttaagaca-tcaatcttaagctggatccacactcttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatt 282  Q
    ||||||||||||  ||||||||| |  |||||||||||||||| ||||||||||||| |||||| ||| |||| |  | |||||||||| | ||||| |     
T  28557203 ctcacttaagaccctcaatcttatgtgggatccacactcttttaatattaaaaaattgaaatgtaataatataaaagtgttgatagttgattagtgagtc 28557302  T
Q  283 tcatttaaaaaatttgtgtaaaatgttgggttgaag--attgagtgcttattagatactactattaaaaaattatgaatt 360  Q
    || ||||||||| || ||| | ||  | ||||| ||  |||||||  ||||||| |||||||||||||||||||| ||||    
T  28557303 tcttttaaaaaaattatgtgagatcctaggttggaggaattgagtagttattaggtactactattaaaaaattataaatt 28557382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 203 - 355
Target Start/End: Complemental strand, 2603219 - 2603066
Alignment:
Q  203 ttaagctggatccacactcttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatttcatttaaaaaatttgtgta 302  Q
    |||||| || ||| ||| ||||| ||||||||||||| ||||||  |  |||| ||||||||||||||| | |||| || |||||||| || |||||||     
T  2603219 ttaagcggggtccgcacgcttttaatattaaaaaattgaaatgtagtgatataaagttattgatagttgattagtggatctcatttaagaactttgtgtg 2603120  T
Q  303 aaatgttgggttgaag--attgagtgcttattagatactactattaaaaaattat 355  Q
    | || | || ||| ||  ||||||| |||||||||||||||||||||||||||||    
T  2603119 agatct-ggattggagggattgagtacttattagatactactattaaaaaattat 2603066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 221 - 355
Target Start/End: Complemental strand, 18806697 - 18806562
Alignment:
Q  221 cttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatttcatttaaaaaatttgtgtaaaatgttgggttga-aga 319  Q
    ||||| ||||||||||||| |||| | ||  |||| ||||||||||||||| | |||| ||  |||||||||||||||||| | || | || ||||  ||    
T  18806697 cttttaatattaaaaaattgaaatataatgatataaagttattgatagttgattagtggatcccatttaaaaaatttgtgtgagatctaggtttgagtga 18806598  T
Q  320 ttgagtgcttattagatactactattaaaaaattat 355  Q
    | || || ||||||||||||||||||||||||||||    
T  18806597 tcgaatgtttattagatactactattaaaaaattat 18806562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 203 - 301
Target Start/End: Original strand, 9134128 - 9134226
Alignment:
Q  203 ttaagctggatccacactcttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatttcatttaaaaaatttgtgt 301  Q
    |||||| |||||| ||||||||| ||||||||||||| |||| | ||  |||| ||||||||||||||| | ||||| | |||||||| || |||||||    
T  9134128 ttaagcgggatccgcactcttttaatattaaaaaattgaaatataatgatataaagttattgatagttgattagtgagtctcatttaagaactttgtgt 9134226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 222 - 355
Target Start/End: Complemental strand, 13629165 - 13629030
Alignment:
Q  222 ttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatttcatttaaaaaatttgtgtaaaatgttgggttgaag--a 319  Q
    |||| ||||||||||||| | |||| || ||||| ||||||||||||||| |   || ||   |||||| || ||||| | | ||||||||||| ||  |    
T  13629165 ttttaatattaaaaaattgatatgtaatggtataaagttattgatagttgatttctggatcctatttaagaattttgtatgagatgttgggttggaggga 13629066  T
Q  320 ttgagtgcttattagatactactattaaaaaattat 355  Q
    |||| | |||||||||||||||||||||||||||||    
T  13629065 ttgactacttattagatactactattaaaaaattat 13629030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 222 - 355
Target Start/End: Complemental strand, 13729577 - 13729442
Alignment:
Q  222 ttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatttcatttaaaaaatttgtgtaaaatgttgggttgaag--a 319  Q
    |||| ||||||||||||| | |||| || ||||| ||||||||||||||| |   || ||   |||||| || ||||| | | ||||||||||| ||  |    
T  13729577 ttttaatattaaaaaattgatatgtaatggtataaagttattgatagttgatttctggatcctatttaagaattttgtatgagatgttgggttggaggga 13729478  T
Q  320 ttgagtgcttattagatactactattaaaaaattat 355  Q
    |||| | |||||||||||||||||||||||||||||    
T  13729477 ttgactacttattagatactactattaaaaaattat 13729442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 271
Target Start/End: Original strand, 28575357 - 28575445
Alignment:
Q  184 ctcacttaagaca-tcaatcttaagctggatccacactcttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttg 271  Q
    ||||||||||||  |||||||||||| ||| |||| ||||||| ||||||||||||| |||| | ||  |||| |||||||||||||||    
T  28575357 ctcacttaagaccctcaatcttaagcgggacccactctcttttaatattaaaaaattgaaatataatgatataaagttattgatagttg 28575445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 198 - 355
Target Start/End: Complemental strand, 1155292 - 1155130
Alignment:
Q  198 caatcttaagctggatccacactcttttgatattaaaaaattaaaatgtgatag----tatatagttattgatagttggtcagtgaatttcatttaaaaa 293  Q
    ||||||||||| |||  ||||||||||| ||||||||||||| |||||| ||      |||| |||||||| |||||| | | |   | |||||||| ||    
T  1155292 caatcttaagcgggactcacactcttttaatattaaaaaattgaaatgtaattaatgatataaagttattggtagttgattaatatgtctcatttaagaa 1155193  T
Q  294 atttgtgtaaaatgttgggttgaag--attgagtgcttattagatactactattaaaaaattat 355  Q
    |||||||| | || | |||||| ||  ||||| |||||||||||||||||||||||||||||||    
T  1155192 atttgtgtgagatct-gggttggagggattgaatgcttattagatactactattaaaaaattat 1155130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 350
Target Start/End: Complemental strand, 8673766 - 8673597
Alignment:
Q  184 ctcacttaagaca-tcaatcttaagctggatccacactcttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatt 282  Q
    ||||||||||||  ||||||||||   ||| ||| ||| |||| |||||||||||| |||||||  |  |||| |||| |||||| ||| | ||||  |     
T  8673766 ctcacttaagaccctcaatcttaaatgggacccaaacttttttaatattaaaaaatgaaaatgtagtgatataaagtttttgataattgattagtgggtc 8673667  T
Q  283 tcatttaaaaaatttgtgtaaaatgttgggttgaaga--ttgagtgcttattagatactactattaaaaa 350  Q
      ||||||||||||| ||| | ||| ||||||| |||  ||||||||||||||| |||||||||||||||    
T  8673666 aaatttaaaaaatttatgtgagatgctgggttggagagattgagtgcttattaggtactactattaaaaa 8673597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 252 - 355
Target Start/End: Complemental strand, 30714147 - 30714042
Alignment:
Q  252 tatatagttattgatagttggtcagtgaatttcatttaaaaaatttgtgtaaaatgttgggttg--aagattgagtgcttattagatactactattaaaa 349  Q
    |||| ||||||||||||||| | ||||| |  |||||| ||||||||||| | ||||||| |||  || ||| |||||||||||  ||||||||||||||    
T  30714147 tataaagttattgatagttgattagtgagtcccatttacaaaatttgtgtgagatgttggattggaaatattaagtgcttattatgtactactattaaaa 30714048  T
Q  350 aattat 355  Q
     |||||    
T  30714047 tattat 30714042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 252 - 355
Target Start/End: Complemental strand, 30721924 - 30721819
Alignment:
Q  252 tatatagttattgatagttggtcagtgaatttcatttaaaaaatttgtgtaaaatgttgggttg--aagattgagtgcttattagatactactattaaaa 349  Q
    |||| ||||||||||||||| | ||||| |  |||||| ||||||||||| | ||||||| |||  || ||| |||||||||||  ||||||||||||||    
T  30721924 tataaagttattgatagttgattagtgagtcccatttacaaaatttgtgtgagatgttggattggaaatattaagtgcttattatgtactactattaaaa 30721825  T
Q  350 aattat 355  Q
     |||||    
T  30721824 tattat 30721819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 355
Target Start/End: Original strand, 38937722 - 38937923
Alignment:
Q  156 tttttagaggtcttataagatcgaaagcctcacttaagacatcaatcttaagctggatccacactcttttgatattaaaaaattaaaatgtgatagtata 255  Q
    ||||| || ||||||||||| | | || || |||||||||  ||||||||||  | | |||||   |||| ||||||||||||||| |||||||  ||||    
T  38937722 tttttggaagtcttataagacccagagtcttacttaagaccccaatcttaagtggaacccacatctttttaatattaaaaaattaatatgtgatgatata 38937821  T
Q  256 tagttattgatagttggtcagtgaatttcatttaaaaaatttgtgtaaaatgttgggttgaa--gattgagtgcttattagatactactattaaaaaatt 353  Q
     |||| |||||||||| |  ||| ||   ||||||||| ||||||| | |||||| |||| |  |||||||| |||||||| |   ||||||||||||||    
T  38937822 aagttgttgatagttgatttgtggatcctatttaaaaactttgtgtgagatgttgtgttggagggattgagttcttattaggtgtcactattaaaaaatt 38937921  T
Q  354 at 355  Q
    ||    
T  38937922 at 38937923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 222 - 371
Target Start/End: Original strand, 3628225 - 3628374
Alignment:
Q  222 ttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatttcatttaaaaaatttgtgtaaaatgttgggttgaag--a 319  Q
    |||| ||||||||||||| | |||| ||  |||| |||||||| |||||| | | |||||||||||||| |||||||||  | ||  || |||| ||  |    
T  3628225 ttttaatattaaaaaattgagatgtaatgatataaagttattgctagttgattaatgaatttcatttaagaaatttgtg--agatactgagttggaggaa 3628322  T
Q  320 ttgagtgcttattagatactactattaaaaaattatgaattgatgatatgta 371  Q
    || |||||||||||   ||||||||||||||||||| |||  ||||||||||    
T  3628323 tttagtgcttattaagcactactattaaaaaattataaataaatgatatgta 3628374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 271
Target Start/End: Original strand, 28562266 - 28562354
Alignment:
Q  184 ctcacttaagaca-tcaatcttaagctggatccacactcttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttg 271  Q
    ||||||||||||  |||||||||||| ||| |||| || |||| ||||||||||||| |||| | ||| |||| |||||||||| ||||    
T  28562266 ctcacttaagaccctcaatcttaagcgggacccactctattttaatattaaaaaattgaaatataataatataaagttattgattgttg 28562354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 271
Target Start/End: Original strand, 28567764 - 28567852
Alignment:
Q  184 ctcacttaagaca-tcaatcttaagctggatccacactcttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttg 271  Q
    ||||||||||||  |||||||||||| ||| |||| || |||| ||||||||||||| |||| | ||  |||| |||||||||||||||    
T  28567764 ctcacttaagaccctcaatcttaagcgggacccactctattttaatattaaaaaattgaaatataatgatataaagttattgatagttg 28567852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 286 - 355
Target Start/End: Original strand, 35893440 - 35893511
Alignment:
Q  286 tttaaaaaatttgtgtaaaatgttgggttgaaga--ttgagtgcttattagatactactattaaaaaattat 355  Q
    |||||||||||||| | ||  | |||||||||||  |||| ||||||||| |||||||||||||||||||||    
T  35893440 tttaaaaaatttgtctgaagcggtgggttgaagaaattgactgcttattaaatactactattaaaaaattat 35893511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 271
Target Start/End: Complemental strand, 6427288 - 6427181
Alignment:
Q  165 gtcttataagatcgaaagcctcacttaagacatc-aatcttaagctggatccacactcttttgatattaaaaaattaaaatgtgatagtatatagttatt 263  Q
    ||||||||||| ||| || |||||||||||| || |||| ||| | ||| |||||||  ||| |||||||||||||||||| | ||  |||| | |||||    
T  6427288 gtcttataagaccgatagtctcacttaagacctctaatcctaaacgggacccacactagtttaatattaaaaaattaaaatataatgatataaaattatt 6427189  T
Q  264 gatagttg 271  Q
    ||||||||    
T  6427188 gatagttg 6427181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 210 - 244
Target Start/End: Complemental strand, 14426260 - 14426226
Alignment:
Q  210 ggatccacactcttttgatattaaaaaattaaaat 244  Q
    |||||||||||||||| ||||||||||||||||||    
T  14426260 ggatccacactcttttaatattaaaaaattaaaat 14426226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 324 - 353
Target Start/End: Original strand, 4325564 - 4325593
Alignment:
Q  324 gtgcttattagatactactattaaaaaatt 353  Q
    ||||||||||||||||||||||||||||||    
T  4325564 gtgcttattagatactactattaaaaaatt 4325593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 290
Target Start/End: Complemental strand, 5139808 - 5139735
Alignment:
Q  217 cactcttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatttcatttaa 290  Q
    ||||||||| |||||||||||| ||||| | ||  |||| | ||||||||||||| | ||||| ||||||||||    
T  5139808 cactcttttaatattaaaaaatgaaaatataatgatataaaattattgatagttgattagtgagtttcatttaa 5139735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 318 - 355
Target Start/End: Complemental strand, 31128587 - 31128550
Alignment:
Q  318 gattgagtgcttattagatactactattaaaaaattat 355  Q
    |||||| |||||||||| ||||||||||||||||||||    
T  31128587 gattgaatgcttattaggtactactattaaaaaattat 31128550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 318 - 371
Target Start/End: Complemental strand, 36815871 - 36815818
Alignment:
Q  318 gattgagtgcttattagatactactattaaaaaattatgaattgatgatatgta 371  Q
    ||||| |||||||||||||| ||||||||||||| ||| |||  ||||||||||    
T  36815871 gattgcgtgcttattagatattactattaaaaaaatataaataaatgatatgta 36815818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 4e-22; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 197 - 355
Target Start/End: Original strand, 387695 - 387856
Alignment:
Q  197 tcaatcttaagctggatccacactcttttgatattaaaaaattaaaa-tgtgatagtatatagttattgatagttggtcagtgaatttcatttaaaaaat 295  Q
    |||||||||||  ||||||||| | |||  ||||||||||||||||| | | ||| |||| ||||||||||||||| | ||||  | | |||||| ||||    
T  387695 tcaatcttaagtgggatccacattttttaaatattaaaaaattaaaaatataataatataaagttattgatagttgattagtgggtcttatttaagaaat 387794  T
Q  296 ttgtgtaaaatgttgggttgaag--attgagtgcttattagatactactattaaaaaattat 355  Q
    |||||| ||||||||| |||||   ||||||||| ||| |||||||||||||||||||||||    
T  387795 ttgtgtgaaatgttggattgaatgaattgagtgcctatcagatactactattaaaaaattat 387856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 203 - 355
Target Start/End: Complemental strand, 32658572 - 32658419
Alignment:
Q  203 ttaagctggatccacactcttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatttcatttaaaaaatttgtgta 302  Q
    |||||| ||| |||||||||||| |||||||||||||||||| |  |  |||| ||||||||||||||| | |||| ||| ||||||| || |||||||     
T  32658572 ttaagcgggacccacactcttttaatattaaaaaattaaaatatactgatataaagttattgatagttgattagtggattccatttaagaactttgtgtg 32658473  T
Q  303 aaatgttgggttgaa--gattgagtgcttattagatactactattaaaaaattat 355  Q
    | ||  ||||||| |  |||| |||| ||||||| ||||||||||||||||||||    
T  32658472 agat-atgggttggagtgatttagtgtttattaggtactactattaaaaaattat 32658419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 252 - 355
Target Start/End: Complemental strand, 31743659 - 31743554
Alignment:
Q  252 tatatagttattgatagttggtcagtgaatttcatttaaaaaatttgtgtaaaatgttgggttgaag--attgagtgcttattagatactactattaaaa 349  Q
    |||| ||||||| ||||||| | | || || |||||||| |||||||||||| ||||| ||||||||  ||||||| |||||||||||||||||||||||    
T  31743659 tataaagttattaatagttgattaatgtatctcatttaataaatttgtgtaagatgttcggttgaagggattgagttcttattagatactactattaaaa 31743560  T
Q  350 aattat 355  Q
     |||||    
T  31743559 tattat 31743554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 184 - 355
Target Start/End: Complemental strand, 7694090 - 7693916
Alignment:
Q  184 ctcacttaagacat-caatcttaagctggatccacactcttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatt 282  Q
    |||||||||||| | ||||||||||  ||| | ||||| |||| ||||||||||||| ||||||  |  |||  ||||||||||||||| | ||||  ||    
T  7694090 ctcacttaagaccttcaatcttaagagggacctacacttttttaatattaaaaaattgaaatgtattgatatgaagttattgatagttgattagtgggtt 7693991  T
Q  283 tcatttaaaaaatttgtgtaaaatgttgggttgaa--gattgagtgcttattagatactactattaaaaaattat 355  Q
     |||||||||||||||||| | ||  ||||||| |  |||||||| |||||||| ||||| || |||||||||||    
T  7693990 ccatttaaaaaatttgtgtgagattatgggttggagggattgagtacttattaggtactattactaaaaaattat 7693916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 215 - 296
Target Start/End: Original strand, 6988165 - 6988246
Alignment:
Q  215 cacactcttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatttcatttaaaaaatt 296  Q
    ||||||||||| |||||||||||||||||||||||  |||| | ||||||||||||| | |||   ||||||||||||||||    
T  6988165 cacactcttttaatattaaaaaattaaaatgtgatgatataaaattattgatagttgtttagtaggtttcatttaaaaaatt 6988246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 217 - 351
Target Start/End: Complemental strand, 32977505 - 32977370
Alignment:
Q  217 cactcttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatttcatttaaaaaatttgtgtaaaatgttgggttga 316  Q
    ||||||||| || |||||||||| ||||||  | ||||| ||||||||||||||| | ||||  |  ||||||| || ||||||| | || | ||||||     
T  32977505 cactcttttaatgttaaaaaattgaaatgtagtggtataaagttattgatagttgattagtgggtcccatttaagaactttgtgtgagatct-gggttgg 32977407  T
Q  317 ag--attgagtgcttattagatactactattaaaaaa 351  Q
    ||  |||||||||||||||| ||||||||||||||||    
T  32977406 agggattgagtgcttattaggtactactattaaaaaa 32977370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 318 - 353
Target Start/End: Complemental strand, 22281798 - 22281763
Alignment:
Q  318 gattgagtgcttattagatactactattaaaaaatt 353  Q
    ||||||||||||||||| ||||||||||||||||||    
T  22281798 gattgagtgcttattaggtactactattaaaaaatt 22281763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 269
Target Start/End: Complemental strand, 9491906 - 9491836
Alignment:
Q  199 aatcttaagctggatccacactcttttgatattaaaaaattaaaatgtgatagtatatagttattgatagt 269  Q
    |||||||||  ||| ||||| | |||| |||||||||||||||||||| ||  |||| |||||||||||||    
T  9491906 aatcttaagtgggacccacatttttttaatattaaaaaattaaaatgtaatgatataaagttattgatagt 9491836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 187 - 355
Target Start/End: Complemental strand, 32887765 - 32887597
Alignment:
Q  187 acttaagacatcaatcttaagctggatccacactcttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatttcat 286  Q
    ||||||||  ||||||||||   ||| |||||||||||| |||||||||||||||||||| ||| |||| ||||||| ||||||| | |||| |||| ||    
T  32887765 acttaagatctcaatcttaattgggacccacactcttttaatattaaaaaattaaaatgtaataatataaagttatttatagttgattagtggattt-at 32887667  T
Q  287 ttaaaaaatttgtgtaaaatgttgggttga-agattgagtgcttattagatactactattaaaaaattat 355  Q
    ||||||||||| ||| | || | |  | || ||||||| ||||||||||  || ||||||||||||||||    
T  32887666 ttaaaaaatttatgtgatatctggattggagagattgaatgcttattaggcaccactattaaaaaattat 32887597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 217 - 355
Target Start/End: Original strand, 30465252 - 30465392
Alignment:
Q  217 cactcttttgatattaaaaaattaaaatgtga-tagtatatagttattgatagttggtcagtgaatttcatttaaaaaatttgtgtaaaatgttgggttg 315  Q
    ||||||||| |||||||||||||  ||  ||| || |||| ||||||||||||||  | | ||||||| ||||||||||  | ||| ||||| |||||||    
T  30465252 cactcttttaatattaaaaaatttgaaattgagtaatataaagttattgatagttaattaatgaattttatttaaaaaaaat-tgtgaaatgctgggttg 30465350  T
Q  316 aag--attgagtgcttattagatactactattaaaaaattat 355  Q
    |||  ||||| | |||||||||||||||||||||||||||||    
T  30465351 aagggattgaattcttattagatactactattaaaaaattat 30465392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 198 - 355
Target Start/End: Original strand, 11921916 - 11922074
Alignment:
Q  198 caatcttaagctggatccacactcttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatttcatttaaaaaattt 297  Q
    ||||||||||| |||  ||||| ||||| |||||||||||||| ||| | ||  |||| |||||||| |||||| | |||   |  ||||||| ||||||    
T  11921916 caatcttaagcgggactcacacacttttaatattaaaaaattagaatctaatgatataaagttattggtagttgattagtaggtcccatttaagaaattt 11922015  T
Q  298 gtgtaaaatgttgggttgaag--attgagtgcttattagatactactattaaaaaattat 355  Q
    |||| | || |||||||| ||  ||||||||||| |||| ||||||||||||||||||||    
T  11922016 gtgtgagat-ttgggttggaggaattgagtgctttttaggtactactattaaaaaattat 11922074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 252 - 355
Target Start/End: Complemental strand, 41265070 - 41264967
Alignment:
Q  252 tatatagttattgatagttggtcagtgaatttcatttaaaaaatttgtgtaaaatgttgggttgaa--gattgagtgcttattagatactactattaaaa 349  Q
    |||| ||||||||||| ||| | |||||||||||||||||||| |||||| | ||||| |||||||  ||||||| |  ||||| |||||||||||||||    
T  41265070 tataaagttattgataattgattagtgaatttcatttaaaaaaattgtgtgagatgttaggttgaaaggattgag-gactatta-atactactattaaaa 41264973  T
Q  350 aattat 355  Q
    ||||||    
T  41264972 aattat 41264967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 318 - 355
Target Start/End: Original strand, 9583235 - 9583272
Alignment:
Q  318 gattgagtgcttattagatactactattaaaaaattat 355  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9583235 gattgagtgcttattagatactactattaaaaaattat 9583272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 184 - 271
Target Start/End: Original strand, 5038669 - 5038756
Alignment:
Q  184 ctcacttaagacatcaatcttaagctggatccacactcttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttg 271  Q
    |||||||||||  |||||||||||| |||  |||| | |||| |||||||||||||||||| | ||| |||| | |||||||||||||    
T  5038669 ctcacttaagatctcaatcttaagcgggacacacaatattttaatattaaaaaattaaaatataataatataaaattattgatagttg 5038756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 252 - 348
Target Start/End: Original strand, 18970022 - 18970120
Alignment:
Q  252 tatatagttattgatagttggtcagtgaatttcatttaaaaaatttgtgtaaaatgttgggttgaaga--ttgagtgcttattagatactactattaaa 348  Q
    |||| ||||||| ||||||| | ||||| |||||||||| |||||||||| | | | || ||||||||  ||||||| ||||||| |||||||||||||    
T  18970022 tataaagttattaatagttgattagtgagtttcatttaagaaatttgtgtgagaggctgagttgaagagattgagtgtttattaggtactactattaaa 18970120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 321 - 355
Target Start/End: Complemental strand, 6710899 - 6710865
Alignment:
Q  321 tgagtgcttattagatactactattaaaaaattat 355  Q
    |||||||||||||||||||||||||||||||||||    
T  6710899 tgagtgcttattagatactactattaaaaaattat 6710865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 355
Target Start/End: Original strand, 26312445 - 26312601
Alignment:
Q  198 caatcttaagctggatccacactcttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatttcatttaaaaaattt 297  Q
    ||||||||||| ||  |||||||||| | ||||||||||||  |||||| ||   ||| |||||||| |||||| | ||||  ||  |||||| ||||||    
T  26312445 caatcttaagcggg--ccacactcttctaatattaaaaaatagaaatgtaatgacataaagttattggtagttgattagtgggttctatttaataaattt 26312542  T
Q  298 gtgtaaaatgttgggttgaag--attgagtgcttattagatactactattaaaaaattat 355  Q
    |||| | || | | |||| ||  |||||||||||||||| ||||||||||||||||||||    
T  26312543 gtgtgagatct-gagttggaggaattgagtgcttattaggtactactattaaaaaattat 26312601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 222 - 294
Target Start/End: Complemental strand, 13022852 - 13022780
Alignment:
Q  222 ttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatttcatttaaaaaa 294  Q
    |||| ||||||||||||| |||||| ||| |||| | ||||||||||||| | ||||| |||||||| |||||    
T  13022852 ttttaatattaaaaaattgaaatgtaataatataaatttattgatagttgattagtgagtttcattttaaaaa 13022780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 314
Target Start/End: Complemental strand, 44887392 - 44887276
Alignment:
Q  198 caatcttaagctggatccacactcttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatttcatttaaaaaattt 297  Q
    |||| |||||| |||| || | |||||| ||||||||||||| |||| | ||  |||| | ||||||||||||| | | || || |||||||||||||||    
T  44887392 caattttaagcaggattcaaattcttttaatattaaaaaattgaaatataatgatataaatttattgatagttgattattggatctcatttaaaaaattt 44887293  T
Q  298 gtgtaaaatgttgggtt 314  Q
    || | | ||||||||||    
T  44887292 gtttgagatgttgggtt 44887276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 328 - 389
Target Start/End: Complemental strand, 44887109 - 44887048
Alignment:
Q  328 ttattagatactactattaaaaaattatgaattgatgatatgtaaatttaaaacttatttaa 389  Q
    ||||||||||||| |||||||||||||| |||  |||||||||| || | ||| ||||||||    
T  44887109 ttattagatactattattaaaaaattataaataaatgatatgtatatatgaaatttatttaa 44887048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 216 - 355
Target Start/End: Original strand, 43822766 - 43822906
Alignment:
Q  216 acactcttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatttcatttaaaaaatttgtgtaaaatgttgggttg 315  Q
    |||||||||| ||||||||||||| ||||||  |  |||| ||||||||||||||| | ||||  |  ||||||| || ||||||| | || | ||||||    
T  43822766 acactcttttaatattaaaaaattgaaatgtagtgatataaagttattgatagttgattagtgggtcccatttaagaactttgtgtgagatct-gggttg 43822864  T
Q  316 aag--attgagtgcttattagatactactattaaaaaattat 355  Q
     ||  |||||||||||||||||||||||||||||||||||||    
T  43822865 gaggaattgagtgcttattagatactactattaaaaaattat 43822906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 203 - 355
Target Start/End: Original strand, 42831622 - 42831776
Alignment:
Q  203 ttaagctggatccacactcttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatttcatttaaaaaatttgtgta 302  Q
    |||||| ||| || ||| ||||| |||||||||||||||||||| ||  |||| | ||||||||||||| | | || || |||||||| |||||| |||     
T  42831622 ttaagcgggacccgcacacttttaatattaaaaaattaaaatgtaatgatataaaattattgatagttgattaatggatctcatttaagaaatttttgtg 42831721  T
Q  303 aaatgttgggttgaag--attgagtgcttattagatactactattaaaaaattat 355  Q
    | ||| | ||||| ||  ||| ||| |||||||| ||||||||||||||||||||    
T  42831722 agatgctaggttggaggaatttagttcttattaggtactactattaaaaaattat 42831776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 216 - 355
Target Start/End: Original strand, 13984028 - 13984168
Alignment:
Q  216 acactcttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatttcatttaaaaaatttgtgtaaaatgttgggttg 315  Q
    |||| ||||| ||||||||||||| ||||||  |  |||| ||||||||||||||| | |||   | |||||||| || ||||||| | || | || | |    
T  13984028 acacgcttttaatattaaaaaattgaaatgtagtgatataaagttattgatagttgattagtaggtctcatttaagaattttgtgtgagatctgggttag 13984127  T
Q  316 a-agattgagtgcttattagatactactattaaaaaattat 355  Q
    | ||||||||| |||||||||||||||||||||||||||||    
T  13984128 agagattgagtacttattagatactactattaaaaaattat 13984168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 203 - 355
Target Start/End: Original strand, 23333737 - 23333890
Alignment:
Q  203 ttaagctggatccacactcttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatttcatttaaaaaatttgtgta 302  Q
    |||||| ||||||  ||| |||| ||||||||||||| |||| | ||| |||| ||||||||||| ||| ||||||| | |||||||| || | |||||     
T  23333737 ttaagcgggatccgtacttttttaatattaaaaaattgaaatataataatataaagttattgatatttgatcagtgagtctcatttaagaactgtgtgtg 23333836  T
Q  303 aaatgttgggttgaa--gattgagtgcttattagatactactattaaaaaattat 355  Q
    | ||  ||||||| |  ||||||||||||||||  ||||| ||||||||||||||    
T  23333837 agat-ctgggttggagtgattgagtgcttattaagtactattattaaaaaattat 23333890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 201 - 355
Target Start/End: Complemental strand, 11241628 - 11241472
Alignment:
Q  201 tcttaagctggatccacactcttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatttcatttaaaaaatttgtg 300  Q
    |||||||  ||||||||||| |||| |||||| |||||| |||| | ||  |||| ||||||||||||||| | |||| ||  | |||||||||||||||    
T  11241628 tcttaagtgggatccacacttttttaatattataaaattgaaatataatgatataaagttattgatagttgattagtggataccttttaaaaaatttgtg 11241529  T
Q  301 taaaatgttgggttgaag--attgagtgcttattagatactactattaaaaaattat 355  Q
    | ||||  ||| ||| ||  |||| ||| ||||||  ||||| ||||||||||||||    
T  11241528 tgaaattatggattggaggaattgggtgtttattatgtactaatattaaaaaattat 11241472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 233 - 351
Target Start/End: Original strand, 43506265 - 43506385
Alignment:
Q  233 aaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatttcatttaaaaaatttgtgtaaaatgttgggttgaa--gattgagtgctta 330  Q
    ||||||| |||||| ||| |||| ||||||||||||||| | ||||| |   |||||| |||||||||| ||||||| ||||| |  |||||||||||||    
T  43506265 aaaaattgaaatgtaataatataaagttattgatagttgattagtgagtcaaatttaataaatttgtgtgaaatgtttggttggagggattgagtgctta 43506364  T
Q  331 ttagatactactattaaaaaa 351  Q
     ||  ||||| ||||||||||    
T  43506365 ctaagtactaatattaaaaaa 43506385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 241 - 352
Target Start/End: Complemental strand, 38118976 - 38118864
Alignment:
Q  241 aaatgtgatagtatatagttattgatagttggtcagtgaatttcatttaaaaaatttgtgtaaaatgttgggttgaaga-ttgagtgcttattagatact 339  Q
    |||||| ||| |||| | ||||||||||||| | | ||| | |||||||||||||||| || |||||||| ||| ||||  |||||| ||||||  ||||    
T  38118976 aaatgtaataatataaaattattgatagttgattaatgagtctcatttaaaaaatttgagtgaaatgttgagtttaagagatgagtgattattaagtact 38118877  T
Q  340 actattaaaaaat 352  Q
    |||||||||||||    
T  38118876 actattaaaaaat 38118864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 198 - 350
Target Start/End: Complemental strand, 38601113 - 38600961
Alignment:
Q  198 caatcttaagctggatccacactcttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatttcatttaaaaaattt 297  Q
    ||||||||||  ||||||||| |  ||| |||||||||| ||||||||| ||  |||| ||||||||||| ||| | ||||  |  ||||||||||||||    
T  38601113 caatcttaagtgggatccacaattctttaatattaaaaa-ttaaaatgtaatgatataaagttattgataattgattagtgggtc-catttaaaaaattt 38601016  T
Q  298 gtgtaaaatgttgggttgaag--attgagtgcttattagatactactattaaaaa 350  Q
    |||| | ||| | | ||||||  ||||||| ||||||||||| ||||||||||||    
T  38601015 gtgtgagatgcttgattgaagggattgagtacttattagatattactattaaaaa 38600961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 318 - 355
Target Start/End: Complemental strand, 24555863 - 24555826
Alignment:
Q  318 gattgagtgcttattagatactactattaaaaaattat 355  Q
    |||||| |||||||||||||||||||||||||||||||    
T  24555863 gattgaatgcttattagatactactattaaaaaattat 24555826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 348
Target Start/End: Complemental strand, 44665468 - 44665316
Alignment:
Q  198 caatcttaagctggatccacactcttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatttcatttaaaaaattt 297  Q
    |||||||||||  ||  || |||||||| ||||||||||||| |||| | ||  |||| | ||||||||||||| | |||| ||||||||||| | ||||    
T  44665468 caatcttaagcgagactcatactcttttaatattaaaaaattgaaatataatgatataaaattattgatagttgattagtgtatttcatttaagagattt 44665369  T
Q  298 gtgtaaaatgttgggttgaa--gattgagtgcttattagatactactattaaa 348  Q
    || | | ||  ||| ||| |  |||||||| ||||||||||| ||||||||||    
T  44665368 gtatgagatactggattggagcgattgagtacttattagatattactattaaa 44665316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 319 - 353
Target Start/End: Complemental strand, 32851789 - 32851755
Alignment:
Q  319 attgagtgcttattagatactactattaaaaaatt 353  Q
    ||||| |||||||||||||||||||||||||||||    
T  32851789 attgattgcttattagatactactattaaaaaatt 32851755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 222 - 300
Target Start/End: Original strand, 51263186 - 51263264
Alignment:
Q  222 ttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatttcatttaaaaaatttgtg 300  Q
    |||| |||||||||||||||||| | ||   ||| ||||||||||||||| | ||||  |||||||||| |||||||||    
T  51263186 ttttaatattaaaaaattaaaatataatgacataaagttattgatagttgattagtgtgtttcatttaagaaatttgtg 51263264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 318 - 355
Target Start/End: Original strand, 27544465 - 27544502
Alignment:
Q  318 gattgagtgcttattagatactactattaaaaaattat 355  Q
    ||||||||||||||||||| ||| ||||||||||||||    
T  27544465 gattgagtgcttattagatgctattattaaaaaattat 27544502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 322 - 355
Target Start/End: Original strand, 38902061 - 38902094
Alignment:
Q  322 gagtgcttattagatactactattaaaaaattat 355  Q
    ||||||||||||| ||||||||||||||||||||    
T  38902061 gagtgcttattaggtactactattaaaaaattat 38902094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 318 - 355
Target Start/End: Complemental strand, 42483737 - 42483700
Alignment:
Q  318 gattgagtgcttattagatactactattaaaaaattat 355  Q
    ||||||||||||||||||||||  ||||||||||||||    
T  42483737 gattgagtgcttattagatactgttattaaaaaattat 42483700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 259 - 355
Target Start/End: Complemental strand, 35463319 - 35463220
Alignment:
Q  259 ttattgatagttggtcagtgaatttcatttaaaaaatttgtgtaaaatgttgggtt-gaa--gattgagtgcttattagatactactattaaaaaattat 355  Q
    ||||||||||||| |   |||||||||||||| |||||||||| | |||||||||| |||  |||||||| |||||||| ||||||||||||||||||||    
T  35463319 ttattgatagttgatttatgaatttcatttaagaaatttgtgtgagatgttgggtttgaaaggattgagtacttattaggtactactattaaaaaattat 35463220  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 210 - 368
Target Start/End: Complemental strand, 1309902 - 1309743
Alignment:
Q  210 ggatccacactcttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatttcatttaaaaaatttgtgtaaaatgtt 309  Q
    |||||| ||||||||| |||||||||||||||||| | ||  |||| | ||||||||| ||| | |||| ||   |||||| || ||||||| | || ||    
T  1309902 ggatccgcactcttttaatattaaaaaattaaaatataatgatataaaattattgataattgattagtgtatccaatttaagaactttgtgtgagat-tt 1309804  T
Q  310 gggttgaag--attgagtgcttattagatactactattaaaaaattatgaattgatgatat 368  Q
    || ||| ||  |||||||||||||||||||||| |||||||||||||| |||  |||||||    
T  1309803 ggattggagtgattgagtgcttattagatactattattaaaaaattataaataaatgatat 1309743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 217 - 355
Target Start/End: Original strand, 2375539 - 2375678
Alignment:
Q  217 cactcttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatttcatttaaaaaatttgtgtaaaatgttgggttga 316  Q
    ||||||||| |||||||||||||||||| | ||  |||| ||||||||||||||| | ||||  |  ||||||| || ||||||| | || |  ||||||    
T  2375539 cactcttttaatattaaaaaattaaaatataattatataaagttattgatagttgattagtgggtcccatttaagaactttgtgtgagatttgaggttga 2375638  T
Q  317 -agattgagtgcttattagatactactattaaaaaattat 355  Q
      |||||| || ||||||| ||||||||||||||||||||    
T  2375639 gtgattgaatgtttattaggtactactattaaaaaattat 2375678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 222 - 301
Target Start/End: Complemental strand, 6761496 - 6761417
Alignment:
Q  222 ttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatttcatttaaaaaatttgtgt 301  Q
    |||| |||||||||||||||||||| ||  |||| |||| |||| ||||| | ||||||||| ||| |||||||||||||    
T  6761496 ttttaatattaaaaaattaaaatgtaatgatataaagttgttgacagttgattagtgaattttattgaaaaaatttgtgt 6761417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 187 - 355
Target Start/End: Complemental strand, 41521025 - 41520855
Alignment:
Q  187 acttaagacatcaatcttaagctggatccacactcttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatttcat 286  Q
    ||||||||| |||||||||||  ||| ||||||  |||| ||| ||||||||| | |||| || ||||| ||||||||||||||  |  |||  |  |||    
T  41521025 acttaagacctcaatcttaagtgggacccacacctttttaatagtaaaaaattgatatgtaatggtataaagttattgatagttaatttgtgggtcccat 41520926  T
Q  287 ttaaaaaatttgtgtaaaatgttgggttgaa--gattgagtgcttattagatactactattaaaaaattat 355  Q
    |||  || ||||||| | ||| ||||||| |  |||||||| |||||||| ||| ||||||||||||||||    
T  41520925 ttaggaactttgtgtgagatgctgggttggagggattgagttcttattaggtaccactattaaaaaattat 41520855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 220 - 355
Target Start/End: Complemental strand, 26675609 - 26675473
Alignment:
Q  220 tcttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatttcatttaaaaaatttgtgtaaaatgttgggttgaag- 318  Q
    |||||| ||||||||||||| || ||||||  |||| ||||||||||| ||| | ||||  | | |||||| |||||| ||| | || |  | | ||||     
T  26675609 tcttttaatattaaaaaattgaagtgtgatgatataaagttattgatatttgattagtgggtctaatttaagaaatttatgtgagatctgagttggaagg 26675510  T
Q  319 attgagtgcttattagatactactattaaaaaattat 355  Q
    ||| ||||||||| |||||||||||||||||||||||    
T  26675509 attaagtgcttataagatactactattaaaaaattat 26675473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 220 - 355
Target Start/End: Complemental strand, 26947217 - 26947081
Alignment:
Q  220 tcttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatttcatttaaaaaatttgtgtaaaatgttgggttgaag- 318  Q
    |||||| ||||||||||||| || ||||||  |||| ||||||||||| ||| | ||||  | | |||||| |||||| ||| | || |  | | ||||     
T  26947217 tcttttaatattaaaaaattgaagtgtgatgatataaagttattgatatttgattagtgggtctaatttaagaaatttatgtgagatctgagttggaagg 26947118  T
Q  319 attgagtgcttattagatactactattaaaaaattat 355  Q
    ||| ||||||||| |||||||||||||||||||||||    
T  26947117 attaagtgcttataagatactactattaaaaaattat 26947081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 283 - 352
Target Start/End: Original strand, 42320966 - 42321037
Alignment:
Q  283 tcatttaaaaaatttgtgtaaaatgttgggttgaag--attgagtgcttattagatactactattaaaaaat 352  Q
    ||||||||||||| ||| |||| |||||| ||||||  ||||| | ||||||| ||||||||||||||||||    
T  42320966 tcatttaaaaaatgtgtctaaagtgttggattgaagtgattgattacttattaaatactactattaaaaaat 42321037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 319 - 352
Target Start/End: Original strand, 41357821 - 41357854
Alignment:
Q  319 attgagtgcttattagatactactattaaaaaat 352  Q
    ||||||||||||||||||||||||||| ||||||    
T  41357821 attgagtgcttattagatactactatttaaaaat 41357854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 215 - 355
Target Start/End: Complemental strand, 55909 - 55771
Alignment:
Q  215 cacactcttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatttcatttaaaaaatttgtgtaaaatgttgggtt 314  Q
    ||||||||||| ||||||||||||| | ||||||| ||||||||||||||||||||  | | ||   |  |||||| |||||||| | | ||||||||||    
T  55909 cacactcttttaatattaaaaaattgatatgtgatggtatatagttattgatagtttattaatg---tgtatttaagaaatttgtatgagatgttgggtt 55813  T
Q  315 ga--agattgagtgcttattagatactactattaaaaaattat 355  Q
    ||  ||| |||||| ||||||| ||||| ||||||||||||||    
T  55812 gaagagactgagtg-ttattagctactaatattaaaaaattat 55771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 222 - 299
Target Start/End: Complemental strand, 36902451 - 36902374
Alignment:
Q  222 ttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatttcatttaaaaaatttgt 299  Q
    |||| |||||||||||||||||| | ||  |||| ||||||||||||||| | |||||||||||||||| ||||||||    
T  36902451 ttttaatattaaaaaattaaaatataatgatataaagttattgatagttgattagtgaatttcatttaagaaatttgt 36902374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 228 - 355
Target Start/End: Complemental strand, 30595203 - 30595074
Alignment:
Q  228 tattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatttcatttaaaaaatttgtgtaaaatgttgggttgaaga--ttgagt 325  Q
    |||||||||||| |||||| ||  |||| | ||||||||||||| | ||||| | |||||||||   ||| ||| |||||||| |||| |||  |||| |    
T  30595203 tattaaaaaatttaaatgtaatgatataaaattattgatagttgattagtgagtctcatttaaattttttttgtgaaatgttgagttggagagattgaat 30595104  T
Q  326 gcttattagatactactattaaaaaattat 355  Q
     |||||||||||||| ||||||||||||||    
T  30595103 tcttattagatactattattaaaaaattat 30595074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 318 - 351
Target Start/End: Complemental strand, 29950816 - 29950783
Alignment:
Q  318 gattgagtgcttattagatactactattaaaaaa 351  Q
    ||||||||||||||||||||||||||||||||||    
T  29950816 gattgagtgcttattagatactactattaaaaaa 29950783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 318 - 351
Target Start/End: Complemental strand, 29999970 - 29999937
Alignment:
Q  318 gattgagtgcttattagatactactattaaaaaa 351  Q
    ||||||||||||||||||||||||||||||||||    
T  29999970 gattgagtgcttattagatactactattaaaaaa 29999937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 217 - 360
Target Start/End: Complemental strand, 36277898 - 36277749
Alignment:
Q  217 cactcttttgatattaaaaaattaaaatgtgata---gtatatagttattgatagttggtcagtgaatttcattt-aaaaaatttgtgtaaaatgttggg 312  Q
    ||||||||| ||||||||||||| |||||| |||    |||| ||||||||||| ||  | ||||  ||| |||| ||||||||||||| | ||| || |    
T  36277898 cactcttttaatattaaaaaattgaaatgtaataatgatataaagttattgatattttattagtgggtttaatttaaaaaaatttgtgtgagatgctgag 36277799  T
Q  313 ttgaag--attgagtgcttattagatactactattaaaaaattatgaatt 360  Q
    ||| ||  ||||| | ||||||||||| ||||||||||||||||| ||||    
T  36277798 ttggaggaattgaatacttattagatattactattaaaaaattataaatt 36277749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 46006210 - 46006156
Alignment:
Q  217 cactcttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttg 271  Q
    ||||||||| |||||||||||||||||| | ||  |||| |||||||||||||||    
T  46006210 cactcttttaatattaaaaaattaaaatataatgatataaagttattgatagttg 46006156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 350
Target Start/End: Complemental strand, 52995819 - 52995651
Alignment:
Q  184 ctcacttaaga-catcaatcttaagctggatccacactcttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttggtcagtgaatt 282  Q
    ||||||||||| | |||||||||| | ||| || ||||||||| ||||||||||| | |||  | ||  |||| ||||||||||||||| | |||   |     
T  52995819 ctcacttaagatcctcaatcttaaacgggagcctcactcttttaatattaaaaaaattaaagataatgatataaagttattgatagttgattagtatgtc 52995720  T
Q  283 tcatttaaaaaatttgtgtaaaatgttgggttg--aagattgagtgcttattagatactactattaaaaa 350  Q
    |||||||| |||||||||| ||||| || ||||  || ||||||| |||||||  ||| |||||||||||    
T  52995719 tcatttaacaaatttgtgtgaaatgatgagttggaaaaattgagt-cttattatgtacaactattaaaaa 52995651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 271
Target Start/End: Original strand, 26085039 - 26085112
Alignment:
Q  198 caatcttaagctggatccacactcttttgatattaaaaaattaaaatgtgatagtatatagttattgatagttg 271  Q
    ||||||||||  ||||||||| | |||| ||||||||||||| |||| | || ||||| |||||||||| ||||    
T  26085039 caatcttaagtgggatccacatttttttaatattaaaaaattgaaatataatggtataaagttattgatggttg 26085112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 292 - 355
Target Start/End: Complemental strand, 40242243 - 40242178
Alignment:
Q  292 aaatttgtgtaaaatgttgggtt-gaaga-ttgagtgcttattagatactactattaaaaaattat 355  Q
    ||||||| |||| ||||||| || ||||| ||||||||||||||| || |||||||||||||||||    
T  40242243 aaatttgagtaagatgttggtttagaagaattgagtgcttattaggtattactattaaaaaattat 40242178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 317 - 366
Target Start/End: Complemental strand, 40861263 - 40861214
Alignment:
Q  317 agattgagtgcttattagatactactattaaaaaattatgaattgatgat 366  Q
    ||||||| | ||||||||||||||| ||||||||||||| ||| ||||||    
T  40861263 agattgaatacttattagatactacaattaaaaaattataaatggatgat 40861214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 317 - 360
Target Start/End: Original strand, 63643 - 63686
Alignment:
Q  317 agattgagtgcttattagatactactattaaaaaattatgaatt 360  Q
    ||||||||| |||||||| |||||||||||||||||||| ||||    
T  63643 agattgagtccttattaggtactactattaaaaaattataaatt 63686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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